CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55238	Soybean	cytosol, mitochondrion	99.02	99.02
KRG92137	Soybean	cytosol, extracellular	98.04	98.04
AT2G18400.1	Thale cress	cytosol, mitochondrion	93.14	93.14
CDY71465	Canola	cytosol, mitochondrion	93.14	93.14
Bra024469.1-P	Field mustard	cytosol, mitochondrion	92.16	92.16
CDY65154	Canola	cytosol, mitochondrion	92.16	92.16
CDY29232	Canola	cytosol, mitochondrion	92.16	92.16
Bra039612.1-P	Field mustard	cytosol, mitochondrion	92.16	92.16
CDY13038	Canola	cytosol, mitochondrion	92.16	92.16
CDY36480	Canola	cytosol, mitochondrion	91.18	91.18
Solyc02g085280.1.1	Tomato	cytosol, extracellular	90.2	90.2
PGSC0003DMT400009003	Potato	cytosol, extracellular	90.2	90.2
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	89.22	89.22
GSMUA_Achr2P08570_001	Banana	mitochondrion	85.29	85.29
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	58.82	84.51
EES01089	Sorghum	cytosol, mitochondrion	78.43	77.67
EES07474	Sorghum	cytosol, mitochondrion	77.45	76.7
Os03t0725000-01	Rice	mitochondrion	76.47	75.73
TraesCS6D01G282100.1	Wheat	mitochondrion	75.49	74.04
TraesCS6B01G331800.1	Wheat	mitochondrion	75.49	74.04
TraesCS6A01G302600.1	Wheat	mitochondrion	75.49	74.04
Zm00001d051422_P001	Maize	mitochondrion	74.51	73.08
TraesCS4D01G056500.1	Wheat	mitochondrion	74.51	73.08
TraesCS4B01G056100.1	Wheat	mitochondrion	74.51	73.08
TraesCS4A01G258300.1	Wheat	cytosol	73.53	72.12
HORVU4Hr1G009420.1	Barley	mitochondrion	73.53	72.12
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	67.65	68.32
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	67.65	66.99
HORVU6Hr1G075100.7	Barley	cytosol	75.49	53.85
KRH38479	Soybean	plastid	44.12	19.91
KRH09014	Soybean	nucleus	43.14	19.47

Protein Annotations

EntrezGene:100780944	MapMan:17.7.1.1.7	Gene3D:3.90.930.12	EMBL:ACUP02006610	EnsemblPlantsGene:GLYMA_10G197100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
UniProt:I1LCL9	InterPro:IPR036789	EnsemblPlants:KRH34653	ProteinID:KRH34653	ProteinID:KRH34653.1	ProteinID:KRH34654.1
PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	UniParc:UPI0001BA87C8

Description

hypothetical protein

Coordinates

chr10:+:42845226..42846669

Molecular Weight (calculated)

11540.4 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.144

Length

102 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EAAGRLLYLK LGYSHEVELA VPPAVRVFCF KNNVICCTGI DKQRVHQFAA TVRTCKPPEV YKGKGIMYVD EVIKKKQGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.