CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010348.1-P	Field mustard	nucleus	99.13	98.95
CDX97461	Canola	nucleus	90.4	91.52
CDY71540	Canola	nucleus, plastid	37.17	80.38
CDY67603	Canola	cytosol	39.27	78.4
CDY35239	Canola	nucleus	78.53	77.19
CDY44573	Canola	cytosol	18.67	75.35
CDX92907	Canola	nucleus	70.33	72.22
AT4G29000.1	Thale cress	nucleus	72.95	69.32
CDY05722	Canola	nucleus	55.67	64.44
CDY31991	Canola	nucleus	56.72	64.23
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	48.87	53.44
KRH39300	Soybean	nucleus	50.79	52.06
KRH48373	Soybean	nucleus	50.09	51.07
PGSC0003DMT400000824	Potato	plastid	42.76	50.2
KRH41552	Soybean	nucleus	48.17	50.09
KRH60264	Soybean	nucleus	48.52	49.55
Solyc12g007180.1.1	Tomato	nucleus	42.93	49.4
CDX88196	Canola	nucleus	32.64	36.67
CDX80536	Canola	nucleus	32.64	36.03
CDY19795	Canola	nucleus	28.45	35.82
CDY65712	Canola	nucleus	28.45	35.59
CDY06853	Canola	cytosol, nucleus, plastid	79.06	32.17
CDY28377	Canola	nucleus	18.15	31.71
CDY20184	Canola	cytosol	18.32	30.88
CDY05340	Canola	nucleus	25.65	30.75
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	12.39	24.83
CDY64242	Canola	nucleus	8.38	18.18
CDX79489	Canola	cytosol	9.95	17.65
CDY67857	Canola	nucleus, plastid	17.63	16.72
CDY64240	Canola	cytosol, plastid	17.28	16.61
CDY54822	Canola	cytosol, plastid	15.88	16.58
CDY42785	Canola	nucleus, plastid	18.15	15.83
CDY29770	Canola	nucleus, plastid	17.8	15.77
CDY10668	Canola	nucleus, plastid	15.71	15.68
CDX74164	Canola	nucleus	13.79	15.13
CDY54821	Canola	nucleus	17.63	14.87
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	13.44	14.18
CDY10669	Canola	nucleus	17.63	13.5
CDX92957	Canola	nucleus, plastid	17.63	8.31
CDX94892	Canola	nucleus, plastid	17.98	8.3

Protein Annotations

EnsemblPlants:CDY66476	EnsemblPlantsGene:GSBRNA2T00054404001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY66476	ProteinID:CDY66476.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EEB005	UniProt:A0A078JL05	MapMan:15.5.9	:

Description

BnaA08g30730DBnaA08g30730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JL05]

Coordinates

chrLK035282:+:6302..8923

Molecular Weight (calculated)

61279.4 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.667

Length

573 amino acids

Sequence
(BLAST)

001: MGEGGGGGGG GGGDFPPKKD GESDDSCFPA KKEATQLDFT GGSDEHYSES HTVVTPSVTP PVTTTPSRLH PVARPALPVV TSQSQSQILN APISLPKPPE
101: SPESRARPPI VEGRDGTPQK KKHCNCKLSR CLKLYCECFA AGTYCDGCNC LNCFNNVDNE PARRDAVEAT LDRNPNAFRP KIASSPHGVR DKKEEIVLLG
201: KHNKGCHCKK SGCLKKYCEC FQANVLCSEN CRCLGCKNFE GSEERQALFH GEHANNMAYL QQAANAAITG AVGSSGFAPF PAPKRRKGQD ISFNQATNDS
301: SMHRLGQFQQ ASNGRTSGPT STTSPANVSR AGGNSSAPSK FVYRSLLAEI IQPQDVKALC SVLVAVAGET TKTLTDRRNE TEKRVEDQTE TSLASYNSQG
401: NKTDGSQADG SKGDPLSPAT LALMCDEQDS LFMVAAAEPN GSVDPGGCGT NSQGQSEIYA EKERVVLTKF RDCLTRLISY ADFKESKCSY LARSHIQSPS
501: TVPTVTVKTE NGIQQRPPVV NGASLTTTQP ALNKPQLVQP TTTTDTSSSH HPHKPPALEE NKDTSESNKV YST

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.