Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34235 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.77 | 27.97 |
| CDY44573 | Canola | cytosol | 10.53 | 23.94 |
| CDY71540 | Canola | nucleus, plastid | 17.34 | 21.13 |
| CDY67603 | Canola | cytosol | 16.72 | 18.82 |
| CDY54822 | Canola | cytosol, plastid | 29.72 | 17.49 |
| CDY10668 | Canola | nucleus, plastid | 30.34 | 17.07 |
| Os05t0509400-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 19.5 | 16.84 |
| CDY64240 | Canola | cytosol, plastid | 30.96 | 16.78 |
| TraesCS1A01G327100.1 | Wheat | plastid | 19.2 | 16.67 |
| TraesCS1D01G329200.1 | Wheat | plastid | 19.2 | 16.58 |
| TraesCS1B01G340500.1 | Wheat | cytosol, plastid | 19.2 | 16.58 |
| CDY67857 | Canola | nucleus, plastid | 30.96 | 16.56 |
| EES19781 | Sorghum | cytosol | 18.27 | 16.43 |
| Zm00001d038660_P003 | Maize | nucleus | 18.27 | 16.39 |
| CDY29770 | Canola | nucleus, plastid | 31.58 | 15.77 |
| TraesCS5A01G054200.1 | Wheat | nucleus, plastid | 17.34 | 15.69 |
| CDY42785 | Canola | nucleus, plastid | 31.58 | 15.53 |
| TraesCS5D01G065500.1 | Wheat | nucleus, plastid | 17.03 | 15.32 |
| TraesCS5B01G062200.1 | Wheat | nucleus, plastid | 17.03 | 15.28 |
| CDY64242 | Canola | nucleus | 12.38 | 15.15 |
| CDX74164 | Canola | nucleus | 24.46 | 15.13 |
| CDY54821 | Canola | nucleus | 31.58 | 15.02 |
| HORVU1Hr1G078000.1 | Barley | plastid | 19.2 | 15.01 |
| CDY28377 | Canola | nucleus | 15.17 | 14.94 |
| CDY40681 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 24.46 | 14.55 |
| HORVU5Hr1G013160.11 | Barley | nucleus, plastid | 18.27 | 14.43 |
| CDY20184 | Canola | cytosol | 15.17 | 14.41 |
| Os12t0605300-01 | Rice | nucleus | 17.65 | 14.0 |
| Zm00001d031008_P001 | Maize | nucleus | 16.72 | 13.71 |
| CDY10669 | Canola | nucleus | 31.58 | 13.64 |
| Zm00001d041444_P002 | Maize | nucleus | 16.41 | 13.45 |
| EES17352 | Sorghum | nucleus | 16.1 | 12.71 |
| CDY19795 | Canola | nucleus | 17.65 | 12.53 |
| CDY05340 | Canola | nucleus | 17.96 | 12.13 |
| CDY65712 | Canola | nucleus | 16.72 | 11.79 |
| CDY05722 | Canola | nucleus | 17.34 | 11.31 |
| Zm00001d010713_P006 | Maize | cytosol | 12.69 | 11.23 |
| CDY31991 | Canola | nucleus | 17.34 | 11.07 |
| CDX88196 | Canola | nucleus | 16.41 | 10.39 |
| CDX80536 | Canola | nucleus | 16.41 | 10.21 |
| CDX92907 | Canola | nucleus | 17.34 | 10.04 |
| CDY66476 | Canola | nucleus | 17.65 | 9.95 |
| CDY35239 | Canola | nucleus | 17.65 | 9.78 |
| CDX97461 | Canola | nucleus | 16.72 | 9.54 |
| CDX92957 | Canola | nucleus, plastid | 30.96 | 8.22 |
| CDX94892 | Canola | nucleus, plastid | 31.27 | 8.14 |
| CDY06853 | Canola | cytosol, nucleus, plastid | 17.65 | 4.05 |
Protein Annotations
| EnsemblPlants:CDX79489 | EnsemblPlantsGene:GSBRNA2T00132234001 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| PANTHER:PTHR12446 | PANTHER:PTHR12446:SF21 | PFAM:PF03638 | PFscan:PS51634 | ProteinID:CDX79489 | ProteinID:CDX79489.1 |
| SEG:seg | SMART:SM01114 | UniParc:UPI0004EE2FFB | MapMan:15.5.9 | : | : |
Description
BnaC03g18250D
Coordinates
chrLK031818:-:336984..340318
Molecular Weight (calculated)
35741.2 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.827
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQPNPMNTE TSQPGTTYNG EMDQGNHQGG GVSAAVLKQL KSRTQQTPLE AGEGESRKRC KCKKSKCLQL KCECFAAGVY CSTEPPCSCL YCHNIPIHND
101: TIWASRENIE SRDPLAFTPK IIGRSSDSVQ ETREGDASKT PASGRHRRGC NCKKSNCSKK YCECFQGDAG CSIKCRCEDC KNTFGLEAGE GESRKRCKCK
201: KSKCLQLKCE CFAAGVYCST EPPCSCLYCH NIPIHNDTIW ASRENIESRD PLAFTPKIIG RSSDSVQETR EGDASKTPAS GRHRRGCNCK KSNCSKKYCE
301: CFQGDAGCSI KCRCEDYYKD LAF
101: TIWASRENIE SRDPLAFTPK IIGRSSDSVQ ETREGDASKT PASGRHRRGC NCKKSNCSKK YCECFQGDAG CSIKCRCEDC KNTFGLEAGE GESRKRCKCK
201: KSKCLQLKCE CFAAGVYCST EPPCSCLYCH NIPIHNDTIW ASRENIESRD PLAFTPKIIG RSSDSVQETR EGDASKTPAS GRHRRGCNCK KSNCSKKYCE
301: CFQGDAGCSI KCRCEDYYKD LAF
001: MMDNVKKKSD TPDWETLIAA TTELIYGSPR ESEAFSCLLK KTSNSEARLR GSITATSVAV TNTDVVNNES ESVDALSILH RGVRRRCLDF EVKGNNQQTL
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH
Arabidopsis Description
TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.