CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80536	Canola	nucleus	66.74	61.46
CDX88196	Canola	nucleus	65.48	61.37
CDY19795	Canola	nucleus	57.74	60.66
CDY65712	Canola	nucleus	57.11	59.61
AT5G25790.2	Thale cress	nucleus	56.49	53.57
CDY44573	Canola	cytosol	12.34	41.55
CDY71540	Canola	nucleus, plastid	20.92	37.74
CDY67603	Canola	cytosol	21.97	36.59
HORVU7Hr1G081540.1	Barley	plastid	20.29	33.22
Os06t0332700-00	Rice	nucleus	20.29	32.01
CDY05722	Canola	nucleus	30.96	29.9
CDY28377	Canola	nucleus	20.29	29.57
CDY20184	Canola	cytosol	20.92	29.41
CDY31991	Canola	nucleus	30.96	29.25
Os02t0274600-00	Rice	cytosol, nucleus	25.1	27.46
CDY35239	Canola	nucleus	33.26	27.27
EER89807	Sorghum	cytosol	28.24	26.52
TraesCS7A01G341100.2	Wheat	nucleus, plastid	26.78	26.34
CDX97461	Canola	nucleus	30.96	26.15
TraesCS7D01G338500.1	Wheat	nucleus, plastid	26.57	26.13
CDY66476	Canola	nucleus	30.75	25.65
CDX92907	Canola	nucleus	29.92	25.63
TraesCS7B01G242300.1	Wheat	nucleus	25.94	25.57
Zm00001d037461_P001	Maize	cytosol	27.2	25.44
Zm00001d015990_P001	Maize	nucleus	26.78	24.15
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	18.62	24.12
Os08t0363900-00	Rice	cytosol	17.57	23.66
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	14.02	23.43
KXG30022	Sorghum	nucleus, plastid	26.57	23.39
TraesCS2B01G144400.2	Wheat	plastid	28.24	22.92
TraesCS2A01G122300.2	Wheat	plastid	27.82	22.62
TraesCS2D01G125000.1	Wheat	plastid	27.62	22.45
HORVU2Hr1G021360.2	Barley	plastid	28.45	22.33
CDX79489	Canola	cytosol	12.13	17.96
CDY64242	Canola	nucleus	9.0	16.29
CDY54822	Canola	cytosol, plastid	18.62	16.21
CDY10668	Canola	nucleus, plastid	18.83	15.68
CDY64240	Canola	cytosol, plastid	19.25	15.44
CDY67857	Canola	nucleus, plastid	19.04	15.07
CDY29770	Canola	nucleus, plastid	19.67	14.53
CDY42785	Canola	nucleus, plastid	19.87	14.46
CDX74164	Canola	nucleus	14.85	13.6
CDY54821	Canola	nucleus	19.04	13.4
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	14.64	12.89
CDY10669	Canola	nucleus	18.2	11.63
CDY06853	Canola	cytosol, nucleus, plastid	33.05	11.22
CDX94892	Canola	nucleus, plastid	19.04	7.33
CDX92957	Canola	nucleus, plastid	18.41	7.24

Protein Annotations

EnsemblPlants:CDY05340	EnsemblPlantsGene:GSBRNA2T00120198001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
ncoils:Coil	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY05340
ProteinID:CDY05340.1	SEG:seg	SMART:SM01114	UniParc:UPI0004EF1D0E	MapMan:15.5.9	:

Description

BnaC02g40480D

Coordinates

chrLK031961:+:408274..410403

Molecular Weight (calculated)

52647.5 Da

IEP (calculated)

6.628

GRAVY (calculated)

-1.014

Length

478 amino acids

Sequence
(BLAST)

001: MEKSDQDSVS NRNHSPRQSD SSVPAAAAEA KMDSSNESAI KQSHPVLDSQ DRREEDLPSH PHTPPSSSEK QPSATQDATP PQTLPVHRNQ EPLTPRGQQQ
101: TEAESNDDGT PSKQRRCKCK ASRCLKLYCE CFASGSYCNG CNCLKCQNTL ENEAERQEAI KAILERNPGA FKRKIGASPQ EDVSQLVTLG KHSRGCNCKR
201: SGCLKKYCEC YQANARCSEN CRCRHCKNFE GSQDIKQTTN ATVDLAIDLP QSRKIKAASH SVADRGSSAV PHVQDQTVNY VGRNGDTSLF TVPNNRVVSG
301: STAPTYSYRS SQSDTNQLRH AKELCSLLVS KSVEVANRMS GTDKKRKAEK DSSLDSAQRD ANVMNDSPDC VLDAGRMDEK PMSPATRALM CDEELVTISE
401: KETSARVRTS QEKEDTDTSS EVYAEQENQI LSSFRDHLMQ LFNRGSINGT NIQKANTDPS RKEPEDEEQS HGDSSLGS

Best Arabidopsis Sequence Match ( AT5G25790.1 )
(BLAST)

001: MEDLSNQNLL PRQSDISIPA EKMDSFQKSL EPPPCSPVKS SQQSETEVTP PQKPPLHQFG HNQVQKNRVS NQDPSTSRRH NEVESKENTP NKQQKHCNCK
101: NSKCLKLYCE CFASGSYCNG CNCVNCHNKL ENESSRQVAI SGILERNPDA FKPKIAGSPH GMKDLQENVQ QVLLIGKHSK GCHCRKSGCL KKYCECYQAN
201: ILCSENCRCQ DCKNFEGSEE RKALLHGSQV SDTYIQQMTN AAVNRAIDMS AYLYPPESRK RKSKDISDSV VSSYGVQYQR ANHVRRNGEN SLFSLPNNKA
301: VSGSTTSAYR SSWSNTFQPH HVRELCSLLV SNSVDVANKL SDKGRKNDKG PSSLDGAQRV ANEINDSPDC VLDANRMDEK PISPATRALM CDEEHEIGSE
401: KETSARVKTS QEKEDTDTSS GIYLEQERQI LSIFRDYLIQ LSNRARINGK NIKSNTNPS

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT5G25790]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.