CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19795	Canola	nucleus	80.13	80.66
CDX88196	Canola	nucleus	74.45	66.86
CDX80536	Canola	nucleus	75.11	66.28
CDY05340	Canola	nucleus	59.61	57.11
AT5G25790.2	Thale cress	nucleus	60.92	55.36
CDY44573	Canola	cytosol	16.59	53.52
CDY71540	Canola	nucleus, plastid	24.89	43.02
CDY67603	Canola	cytosol	26.2	41.81
HORVU7Hr1G081540.1	Barley	plastid	25.11	39.38
Os06t0332700-00	Rice	nucleus	22.71	34.32
CDY05722	Canola	nucleus	36.03	33.33
CDY31991	Canola	nucleus	36.24	32.81
Os02t0274600-00	Rice	cytosol, nucleus	29.69	31.12
CDY35239	Canola	nucleus	36.9	28.99
CDX97461	Canola	nucleus	35.81	28.98
TraesCS7A01G341100.2	Wheat	nucleus, plastid	30.35	28.6
TraesCS7D01G338500.1	Wheat	nucleus, plastid	30.35	28.6
CDX92907	Canola	nucleus	34.72	28.49
CDY66476	Canola	nucleus	35.59	28.45
TraesCS7B01G242300.1	Wheat	nucleus	29.91	28.25
CDY28377	Canola	nucleus	20.09	28.05
EER89807	Sorghum	cytosol	31.0	27.9
CDY20184	Canola	cytosol	20.52	27.65
Zm00001d037461_P001	Maize	cytosol	30.13	27.01
Zm00001d015990_P001	Maize	nucleus	28.6	24.72
KXG30022	Sorghum	nucleus, plastid	29.04	24.49
Os08t0363900-00	Rice	cytosol	18.12	23.38
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	18.56	23.04
HORVU2Hr1G021360.2	Barley	plastid	29.69	22.33
TraesCS2B01G144400.2	Wheat	plastid	28.6	22.24
TraesCS2A01G122300.2	Wheat	plastid	28.38	22.11
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	13.76	22.03
TraesCS2D01G125000.1	Wheat	plastid	27.73	21.6
CDX79489	Canola	cytosol	11.79	16.72
CDY64242	Canola	nucleus	9.17	15.91
CDY54822	Canola	cytosol, plastid	18.12	15.12
CDY64240	Canola	cytosol, plastid	19.65	15.1
CDY67857	Canola	nucleus, plastid	19.65	14.9
CDY10668	Canola	nucleus, plastid	17.9	14.29
CDY29770	Canola	nucleus, plastid	19.0	13.45
CDY42785	Canola	nucleus, plastid	19.21	13.39
CDX74164	Canola	nucleus	14.41	12.64
CDY54821	Canola	nucleus	18.34	12.37
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	14.63	12.34
CDY06853	Canola	cytosol, nucleus, plastid	36.68	11.93
CDY10669	Canola	nucleus	17.9	10.96
CDX92957	Canola	nucleus, plastid	18.56	6.99
CDX94892	Canola	nucleus, plastid	18.78	6.93

Protein Annotations

EnsemblPlants:CDY65712	EnsemblPlantsGene:GSBRNA2T00048064001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY65712	ProteinID:CDY65712.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EDAEFB	UniProt:A0A078JK36	MapMan:15.5.9	:

Description

BnaCnng48380DBnaCnng48380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK36]

Coordinates

chrLK034912:+:2210..4666

Molecular Weight (calculated)

50797.2 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.898

Length

458 amino acids

Sequence
(BLAST)

001: MDCEKNHPPH SLLDSNSSRE DHKKEDLLPP PPPSGSEEQV VKSLKPPVRS ELSTPPQRPP LNGFDHESAK CRVSKQEPLT PSKQKHCNCK NSKCLKLYCE
101: CFASGSYCNG CNCLNCQNNL ENETARQEAI TGTLERNPDA FKPKIAGSPL GTNDLQEDVR QLLILGKHSK GCHCKKSGCL KKYCECYQAN VLCSENCKCQ
201: DCKNFEGSQE RNALLYGPET YTQQQQTTNA ALNRAVATSG YLNPLESRKR KSKEASHSAG GSSAFPHLIR NGDTSLFSVP NNRVVSGFTS CSYRSSLSNS
301: IQPRHVKDLC ALLVTRSVDV ANKRRKNEKD SSLDPALIDA NETNDSPDCV LDSTRMDEKP LSPATRALMC DDEDVIISEK ETSAARVKTS QEKEDADTSS
401: ESFVEQERQI LSSFRDFLIQ FSNRGNIKAG MNIKTKTDQS RKEPPEDEEQ RNQHSGLG

Best Arabidopsis Sequence Match ( AT5G25790.1 )
(BLAST)

001: MEDLSNQNLL PRQSDISIPA EKMDSFQKSL EPPPCSPVKS SQQSETEVTP PQKPPLHQFG HNQVQKNRVS NQDPSTSRRH NEVESKENTP NKQQKHCNCK
101: NSKCLKLYCE CFASGSYCNG CNCVNCHNKL ENESSRQVAI SGILERNPDA FKPKIAGSPH GMKDLQENVQ QVLLIGKHSK GCHCRKSGCL KKYCECYQAN
201: ILCSENCRCQ DCKNFEGSEE RKALLHGSQV SDTYIQQMTN AAVNRAIDMS AYLYPPESRK RKSKDISDSV VSSYGVQYQR ANHVRRNGEN SLFSLPNNKA
301: VSGSTTSAYR SSWSNTFQPH HVRELCSLLV SNSVDVANKL SDKGRKNDKG PSSLDGAQRV ANEINDSPDC VLDANRMDEK PISPATRALM CDEEHEIGSE
401: KETSARVKTS QEKEDTDTSS GIYLEQERQI LSIFRDYLIQ LSNRARINGK NIKSNTNPS

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT5G25790]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.