CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64242	Canola	nucleus	48.95	53.03
Os03t0638300-01	Rice	cytosol	15.73	39.82
CDY54821	Canola	nucleus	77.62	32.7
CDY44573	Canola	cytosol	15.04	30.28
AT3G22780.1	Thale cress	nucleus	73.08	30.07
CDY54822	Canola	cytosol, plastid	56.29	29.33
CDY10669	Canola	nucleus	75.52	28.88
CDY10668	Canola	nucleus, plastid	55.94	27.87
CDY64240	Canola	cytosol, plastid	57.34	27.52
CDY67857	Canola	nucleus, plastid	57.34	27.15
CDY29770	Canola	nucleus, plastid	58.74	25.97
CDY42785	Canola	nucleus, plastid	58.74	25.57
CDX79489	Canola	cytosol	27.97	24.77
CDY71540	Canola	nucleus, plastid	19.23	20.75
KRH77830	Soybean	nucleus	54.55	20.16
KRH27657	Soybean	nucleus	54.55	20.16
PGSC0003DMT400082098	Potato	nucleus	54.55	18.89
Solyc09g082500.2.1	Tomato	nucleus	54.2	18.7
KRH35487	Soybean	nucleus	49.65	18.68
GSMUA_Achr9P10600_001	Banana	nucleus	47.9	18.56
CDY67603	Canola	cytosol	18.53	18.47
KRG91344	Soybean	nucleus	49.65	18.35
VIT_14s0030g01800.t01	Wine grape	nucleus	50.35	17.87
GSMUA_Achr8P20460_001	Banana	nucleus	48.25	17.14
CDX94892	Canola	nucleus, plastid	73.08	16.84
CDY28377	Canola	nucleus	19.23	16.77
GSMUA_Achr9P25670_001	Banana	nucleus	48.6	16.77
OQU88523	Sorghum	nucleus	45.45	16.75
Os07t0176200-01	Rice	nucleus	45.45	16.62
HORVU5Hr1G012950.1	Barley	nucleus	44.41	16.58
Os12t0605500-01	Rice	nucleus	44.06	16.58
TraesCS5D01G065300.1	Wheat	nucleus	44.06	16.47
TraesCS5B01G062400.1	Wheat	nucleus	44.06	16.47
CDY20184	Canola	cytosol	19.58	16.47
TraesCS5A01G053800.1	Wheat	nucleus	44.06	16.47
EES17353	Sorghum	nucleus	44.06	16.43
CDX92957	Canola	nucleus, plastid	69.23	16.28
TraesCS4D01G026100.1	Wheat	nucleus	44.41	16.14
Zm00001d018930_P003	Maize	nucleus	45.8	15.86
TraesCS4B01G028500.1	Wheat	nucleus	43.71	15.84
TraesCS4A01G284600.2	Wheat	nucleus	44.41	15.17
Zm00001d031009_P004	Maize	golgi, plasma membrane	44.06	15.14
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	44.06	15.07
EER93767	Sorghum	nucleus	39.16	14.99
CDX74164	Canola	nucleus	26.92	14.75
CDY05722	Canola	nucleus	25.17	14.55
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	27.27	14.36
CDY31991	Canola	nucleus	25.17	14.23
Zm00001d033274_P005	Maize	nucleus	36.01	14.03
CDY05340	Canola	nucleus	23.43	14.02
CDY19795	Canola	nucleus	22.03	13.85
HORVU4Hr1G004280.15	Barley	nucleus, plastid	44.41	13.76
CDY65712	Canola	nucleus	22.03	13.76
CDX88196	Canola	nucleus	23.78	13.33
CDX80536	Canola	nucleus	23.43	12.91
CDX97461	Canola	nucleus	24.83	12.54
CDY66476	Canola	nucleus	24.83	12.39
CDX92907	Canola	nucleus	23.78	12.19
CDY35239	Canola	nucleus	24.48	12.01
CDY06853	Canola	cytosol, nucleus, plastid	24.48	4.97

Protein Annotations

EnsemblPlants:CDY34235	EnsemblPlantsGene:GSBRNA2T00056245001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY34235	ProteinID:CDY34235.1
SEG:seg	SignalP:SignalP-noTM	SMART:SM01114	UniParc:UPI0004EDC0CD	UniProt:A0A078H6N7	MapMan:15.5.9

Description

BnaA01g24520DBnaA01g24520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6N7]

Coordinates

chrLK032331:-:207704..209135

Molecular Weight (calculated)

31925.4 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.329

Length

286 amino acids

Sequence
(BLAST)

001: MLLDFLLIIV AIKIYVHNEN MSTNLGCVHN SFLSASYCEC FAAGVYCIEP CSCIDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRISD SIMETSDDAS
101: KTRASARHKR GCNCKKSNCL KKYCECFQSG VGCSINCRCE GCKNAFGRKD ANIQEIEQNP SSDQPSTPLP PYRQLLIYCF FYLQPFLSKN RLPRTQFFLG
201: ADNDLTQSKN EKKPVETVTE EEPEVIPEIL SNTPITTIKA ISPNSKRVSP PQLGSSESGS MLVKRSNGRK LIVRSIPAFP SLNPHQ

Best Arabidopsis Sequence Match ( AT3G22760.2 )
(BLAST)

001: MMDNVKKKSD TPDWETLIAA TTELIYGSPR ESEAFSCLLK KTSNSEARLR GSITATSVAV TNTDVVNNES ESVDALSILH RGVRRRCLDF EVKGNNQQTL
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.