Factsheet for TraesCS5D01G065300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G053800.1	Wheat	nucleus	98.17	98.17
TraesCS5B01G062400.1	Wheat	nucleus	98.04	98.04
HORVU5Hr1G012950.1	Barley	nucleus	95.69	95.56
Os12t0605500-01	Rice	nucleus	70.33	70.79
EES17353	Sorghum	nucleus	67.32	67.14
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	67.71	61.96
Zm00001d031009_P004	Maize	golgi, plasma membrane	66.41	61.06
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	16.47	44.06
CDY54822	Canola	cytosol, plastid	27.19	37.89
CDY67857	Canola	nucleus, plastid	29.54	37.42
Bra023810.1-P	Field mustard	nucleus, plastid	28.76	37.16
CDY64240	Canola	cytosol, plastid	28.89	37.08
CDY10668	Canola	nucleus, plastid	27.71	36.93
Bra036900.1-P	Field mustard	nucleus, plastid	30.98	36.74
GSMUA_Achr9P10600_001	Banana	nucleus	35.42	36.72
CDY29770	Canola	nucleus, plastid	30.85	36.48
AT4G14770.1	Thale cress	nucleus	32.03	36.35
Bra033920.1-P	Field mustard	plastid	27.06	36.0
TraesCS4D01G026100.1	Wheat	nucleus	36.86	35.83
AT3G22760.1	Thale cress	nucleus	28.5	35.8
CDY42785	Canola	nucleus, plastid	30.59	35.62
VIT_05s0020g03880.t01	Wine grape	nucleus	35.42	35.52
GSMUA_Achr8P20460_001	Banana	nucleus	37.12	35.28
GSMUA_Achr9P25670_001	Banana	nucleus	37.65	34.74
KRH35487	Soybean	nucleus	34.25	34.47
CDY64242	Canola	nucleus	11.9	34.47
TraesCS1D01G393200.1	Wheat	cytosol	8.1	34.44
KRG91344	Soybean	nucleus	34.51	34.11
KRH27657	Soybean	nucleus	34.25	33.85
KRH77830	Soybean	nucleus	33.99	33.59
CDY54821	Canola	nucleus	29.15	32.84
VIT_14s0030g01800.t01	Wine grape	nucleus	33.99	32.26
AT3G22780.1	Thale cress	nucleus	29.28	32.23
Solyc09g082500.2.1	Tomato	nucleus	32.42	29.92
Bra033919.1-P	Field mustard	nucleus	29.15	29.81
PGSC0003DMT400082098	Potato	nucleus	32.16	29.78
CDY10669	Canola	nucleus	28.89	29.55
TraesCS1D01G329200.1	Wheat	plastid	13.99	28.61
TraesCS5D01G065500.1	Wheat	nucleus, plastid	13.2	28.13
TraesCS3D01G233200.1	Wheat	nucleus	8.63	27.16
TraesCS2D01G563300.1	Wheat	nucleus	8.63	25.0
CDX92957	Canola	nucleus, plastid	29.8	18.75
Bra001884.1-P	Field mustard	nucleus, plastid	29.8	18.64
CDX94892	Canola	nucleus, plastid	30.2	18.61
TraesCS7D01G338500.1	Wheat	nucleus, plastid	10.98	17.28
TraesCS3D01G297000.1	Wheat	plastid	12.03	14.96
TraesCS2D01G125000.1	Wheat	plastid	10.33	13.44

Protein Annotations

EnsemblPlants:TraesCS5D01G065300.1	EnsemblPlantsGene:TraesCS5D01G065300	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	SEG:seg	SMART:SM01114
MapMan:15.5.9	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:60631933..60640189

Molecular Weight (calculated)

82148.2 Da

IEP (calculated)

7.605

GRAVY (calculated)

-0.627

Length

765 amino acids

Sequence
(BLAST)

001: MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPQDSSH NVHLFKSSDL APVSSIFASP HVNPPKESKL LIRDDSVQLS QDSNSPNSVR TRLGSAIRLI
101: KCKNIVSENC SFTCHLNQGP MDSSANRSNS TSKLPQTIQF VGDSSECGKN QNADSKKDLA RDQESIELEG VLLDHTGPDK IDSSQPGRTV HENQQCEQQK
201: DGFTAYDGDY LITHESSMDM LRLAPPCEAD TQLVNETLNA DNVFSGNSLL TDGPSGSYIN NAAHDPNLYW DGTVEGPTTD YTPQLLPGAC QSQSVSNDQI
301: CNAVEEPSDH IPIDQSALSQ NMRGMRRRCL FNEKAGAVNK AAKKTSDRHS ANTTTPRCKT NSGDKPVRTP PCALPGIGLH LNALAPISTD KIVPQAAQSS
401: INQASNFPCA VSSSTSESNI ANEDSSQAIV VANADESGQG SPKKKRHKFD DGDGTSCKRC SCKKSKCLKL YCECFHAGVF CSEPCSCQGC LNKPSNMEIV
501: LSTREQIESR NPLAFAPKVI RTSEPGQELG EYSNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS CRCEGCKNAF GRREGLGPLS IEEAKQGNEE
601: NSACVKEEKK EDDNNQLVIC PAANPVPAEN VLTTPSAMDV RPLASRPPSS SKRPRSTTKV LGHPSRLCNS QAPLKTDTLL SPFENYAEIM FGVGTSDSLK
701: GGLSPQTSVK VVSPNKKRVS PPRIGTGLSP ICKSGRKLIL KSIPSFPSLG GDVNNADTKT TLPAP

Best Arabidopsis Sequence Match ( AT3G22760.2 )
(BLAST)

001: MMDNVKKKSD TPDWETLIAA TTELIYGSPR ESEAFSCLLK KTSNSEARLR GSITATSVAV TNTDVVNNES ESVDALSILH RGVRRRCLDF EVKGNNQQTL
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.