Factsheet for TraesCS5A01G053800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G065300.1	Wheat	nucleus	98.17	98.17
TraesCS5B01G062400.1	Wheat	nucleus	97.78	97.78
HORVU5Hr1G012950.1	Barley	nucleus	96.21	96.08
Os12t0605500-01	Rice	nucleus	70.2	70.66
EES17353	Sorghum	nucleus	67.97	67.8
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	67.84	62.08
Zm00001d031009_P004	Maize	golgi, plasma membrane	66.8	61.42
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	16.47	44.06
CDY54822	Canola	cytosol, plastid	27.19	37.89
CDY67857	Canola	nucleus, plastid	29.54	37.42
Bra023810.1-P	Field mustard	nucleus, plastid	28.76	37.16
CDY64240	Canola	cytosol, plastid	28.89	37.08
CDY10668	Canola	nucleus, plastid	27.71	36.93
Bra036900.1-P	Field mustard	nucleus, plastid	30.98	36.74
GSMUA_Achr9P10600_001	Banana	nucleus	35.42	36.72
CDY29770	Canola	nucleus, plastid	30.85	36.48
AT4G14770.1	Thale cress	nucleus	31.9	36.2
Bra033920.1-P	Field mustard	plastid	27.06	36.0
AT3G22760.1	Thale cress	nucleus	28.5	35.8
CDY42785	Canola	nucleus, plastid	30.59	35.62
GSMUA_Achr8P20460_001	Banana	nucleus	37.39	35.53
VIT_05s0020g03880.t01	Wine grape	nucleus	35.42	35.52
GSMUA_Achr9P25670_001	Banana	nucleus	37.65	34.74
KRH35487	Soybean	nucleus	34.51	34.74
CDY64242	Canola	nucleus	11.9	34.47
KRG91344	Soybean	nucleus	34.64	34.24
TraesCS4A01G284600.2	Wheat	nucleus	37.12	33.93
KRH27657	Soybean	nucleus	33.99	33.59
KRH77830	Soybean	nucleus	33.86	33.46
CDY54821	Canola	nucleus	29.15	32.84
VIT_14s0030g01800.t01	Wine grape	nucleus	33.99	32.26
AT3G22780.1	Thale cress	nucleus	29.28	32.23
Solyc09g082500.2.1	Tomato	nucleus	32.55	30.04
PGSC0003DMT400082098	Potato	nucleus	32.29	29.9
Bra033919.1-P	Field mustard	nucleus	29.15	29.81
CDY10669	Canola	nucleus	28.89	29.55
TraesCS5A01G054200.1	Wheat	nucleus, plastid	13.33	28.57
TraesCS1A01G327100.1	Wheat	plastid	13.73	28.23
TraesCS3A01G219300.1	Wheat	nucleus	8.63	27.27
CDX92957	Canola	nucleus, plastid	29.54	18.59
CDX94892	Canola	nucleus, plastid	30.07	18.53
Bra001884.1-P	Field mustard	nucleus, plastid	29.41	18.4
TraesCS7A01G341100.2	Wheat	nucleus, plastid	10.85	17.08
TraesCS3A01G304800.1	Wheat	plastid	12.29	15.28
TraesCS2A01G122300.2	Wheat	plastid	10.59	13.78

Protein Annotations

EnsemblPlants:TraesCS5A01G053800.1	EnsemblPlantsGene:TraesCS5A01G053800	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	SEG:seg	SMART:SM01114
MapMan:15.5.9	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:48917158..48924439

Molecular Weight (calculated)

82042.1 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.614

Length

765 amino acids

Sequence
(BLAST)

001: MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPQDTSH NVHLFKSSDL APVSSIFASP HVNPPKESKL LIRDDSVQLS QDSNSPNSVR TRLGSAIRLI
101: KCKNIVSENC SFTCHLNQGP IDSSANRSNS TSKLPQTIQF VGDSSECGKN QNADGKKDLA RDQESIELEG ALLDHTGPDK IDSSQPGRIV HENQQCEQQK
201: DGFTAYDGDY LITHESSMDM LRLAPPCETD TQLVNETLNA DNVFSGNSLL TDGPSGSYIS NAAHDPNLYW DGTVEGPTTD YTPQLLPGAC QSQSVSNDQI
301: CNAVEEPSDH IPIDQSALSQ NMRGMRRRCL FNEKAGAVNK AAKKTSDRHS ANTTTPRCKT NSGDKPVRTP PCALPGIGLH LNALAPISTD KIVPQAAQSS
401: INQASNFPCA VSSSTSEPNI VNEDSSQAIV VANADESGQG SPKKKRHKFD DGDGTSCKRC SCKKSKCLKL YCECFHAGVF CSEPCSCQGC LNKPSNMEIV
501: LSTREQIESR NPLAFAPKVI RTSEPGQESG EYSNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS CRCEGCKNAF GRREGLGPLS IEEAKQGNEE
601: NSACVKEEKK EDDNNQLVIC PAANPAPAEN VLTTPSAMDI RPLASLPPSS SKRPRSTTKV LGHPSRLCNS QAPLKTDTVL SPFENYAEIM FGVGTSDSLK
701: GGLSPQTSVK VVSPNKKRVS PPRIGTGLSP ICKSGRKLIL KSIPSFPSLG GDVNNADTKT TLPAP

Best Arabidopsis Sequence Match ( AT4G14770.3 )
(BLAST)

001: MQDSPVFNYI NSLSPIRPVR SIPNPNQFSS LNFTSPPSVF TSPHLTSSHK ESRFFKTHNS SSSDPTNSVE SQEDESTSHE EVPAEGEDTK GLNIDDCMRE
101: EASVETNLDD SVASPCGGNT TDLSLVPYAP TRGEDGSCED NGMELQKMHD NVQGKTETPD WESLIADASE LLIFDSPDAS EAFRCFMMQR ASNSEARFRN
201: GVEKQTMQHD SNKEPESANA IPYEAVSLLH RGIRRRCLDF EMPGNKQTSS ENNTAACESS SRCVVPSIGL HLNAILMSSK DCKTNVTQDY SCSANIQVGL
301: QRSISTLQDS LDQTENEIRE DADQDVPVEP ALQELNLSSP KKKRVKLDSG EGESCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCIDCFN KPIHEDVVLA
401: TRKQIESRNP LAFAPKVIRN SDSVQETGDD ASKTPASARH KRGCNCKKSN CLKKYCECYQ GGVGCSINCR CEGCKNAFGR KDGSSIDMEA EQEEENETSE
501: KSRTAKSQQN TEVLMRKDMS SALPTTPTPI YRPELVQLPF SSSKNRMPPP QSLLGGGSSS GIFNSQYLRK PDISLSQSRI EKSFETVAVD GAEQMPEILI
601: HSPIPNIKSV SPNGKRVSPP HMESSSSGSI LGRRNGGRKL ILQSIPSFPS LTPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.