Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G065300.1 | Wheat | nucleus | 98.04 | 98.04 |
| TraesCS5A01G053800.1 | Wheat | nucleus | 97.78 | 97.78 |
| HORVU5Hr1G012950.1 | Barley | nucleus | 96.08 | 95.95 |
| Os12t0605500-01 | Rice | nucleus | 70.07 | 70.53 |
| EES17353 | Sorghum | nucleus | 67.19 | 67.01 |
| Zm00001d041445_P007 | Maize | golgi, nucleus, plasma membrane | 67.58 | 61.84 |
| Zm00001d031009_P004 | Maize | golgi, plasma membrane | 66.27 | 60.94 |
| CDY34235 | Canola | endoplasmic reticulum, extracellular, vacuole | 16.47 | 44.06 |
| CDY54822 | Canola | cytosol, plastid | 27.06 | 37.7 |
| CDY67857 | Canola | nucleus, plastid | 29.67 | 37.58 |
| Bra023810.1-P | Field mustard | nucleus, plastid | 28.89 | 37.33 |
| CDY64240 | Canola | cytosol, plastid | 29.02 | 37.25 |
| CDY10668 | Canola | nucleus, plastid | 27.58 | 36.76 |
| GSMUA_Achr9P10600_001 | Banana | nucleus | 35.42 | 36.72 |
| Bra036900.1-P | Field mustard | nucleus, plastid | 30.59 | 36.28 |
| AT4G14770.1 | Thale cress | nucleus | 31.76 | 36.05 |
| CDY29770 | Canola | nucleus, plastid | 30.46 | 36.01 |
| TraesCS4B01G028500.1 | Wheat | nucleus | 37.12 | 35.99 |
| Bra033920.1-P | Field mustard | plastid | 26.93 | 35.83 |
| AT3G22760.1 | Thale cress | nucleus | 28.37 | 35.63 |
| GSMUA_Achr8P20460_001 | Banana | nucleus | 37.25 | 35.4 |
| VIT_05s0020g03880.t01 | Wine grape | nucleus | 35.29 | 35.39 |
| CDY42785 | Canola | nucleus, plastid | 30.2 | 35.16 |
| GSMUA_Achr9P25670_001 | Banana | nucleus | 37.91 | 34.98 |
| CDY64242 | Canola | nucleus | 11.9 | 34.47 |
| KRH35487 | Soybean | nucleus | 34.12 | 34.34 |
| KRG91344 | Soybean | nucleus | 34.25 | 33.85 |
| KRH27657 | Soybean | nucleus | 33.99 | 33.59 |
| KRH77830 | Soybean | nucleus | 33.86 | 33.46 |
| CDY54821 | Canola | nucleus | 29.54 | 33.28 |
| AT3G22780.1 | Thale cress | nucleus | 29.28 | 32.23 |
| VIT_14s0030g01800.t01 | Wine grape | nucleus | 33.86 | 32.13 |
| Bra033919.1-P | Field mustard | nucleus | 29.28 | 29.95 |
| CDY10669 | Canola | nucleus | 29.02 | 29.68 |
| Solyc09g082500.2.1 | Tomato | nucleus | 32.03 | 29.55 |
| PGSC0003DMT400082098 | Potato | nucleus | 31.76 | 29.42 |
| TraesCS1B01G340500.1 | Wheat | cytosol, plastid | 13.86 | 28.34 |
| TraesCS5B01G062200.1 | Wheat | nucleus, plastid | 13.2 | 28.06 |
| TraesCS3B01G249700.1 | Wheat | nucleus | 8.89 | 26.05 |
| TraesCS1B01G411800.1 | Wheat | nucleus | 8.89 | 25.95 |
| CDX92957 | Canola | nucleus, plastid | 29.67 | 18.67 |
| CDX94892 | Canola | nucleus, plastid | 30.07 | 18.53 |
| Bra001884.1-P | Field mustard | nucleus, plastid | 29.54 | 18.48 |
| TraesCS7B01G242300.1 | Wheat | nucleus | 11.11 | 17.53 |
| TraesCS3B01G331700.1 | Wheat | plastid | 12.03 | 14.96 |
| TraesCS2B01G144400.2 | Wheat | plastid | 10.59 | 13.75 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G062400.1 | EnsemblPlantsGene:TraesCS5B01G062400 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| PANTHER:PTHR12446 | PANTHER:PTHR12446:SF21 | PFAM:PF03638 | PFscan:PS51634 | SEG:seg | SMART:SM01114 |
| MapMan:15.5.9 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:70090824..70098905
Molecular Weight (calculated)
82113.2 Da
IEP (calculated)
7.595
GRAVY (calculated)
-0.613
Length
765 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPQDSSH NVHLFKSSDL APVSSIFASP HVNPPKESKL LIRDDSVQLS QDSNSPNSVR TRLGSAIRLI
101: KCKNIVSENC SFTCHLNQGP IDSSANRSNS TSKLPQTIQF VGDSSECGKN QSADGKKDLA RDQESIELEG VLLDHTGPDK IDSSQPGRIV HENQQCEQQK
201: DGFTAYDGDY LITHESSMDM LRLAPPCEAD TQLVNETLNA DNVFSGNSLL TDGPSGSYIN NAAHDPNLYW DGTVEGPTTD YTPQLLSGAC QSQSVSNDQI
301: CNAVEEPSDH IPIDQSALSQ NMRGMRRRCL FNEKAGAVNK AAKKTSDRHS ANTTTPRCKT NSGDKPVRTP PCALPGIGLH LNALAPISTD KIVPQAAQST
401: INQASNFPCA VSSSTAEPNI VNEDSSQAIV VANADESGQG SPKKKRHKFD DGDGTSCKRC SCKKSKCLKL YCECFHAGVF CSEPCSCQGC LNKPSNMEIV
501: LSTREQIESR NPLAFAPKVI RTSEPGQELG EYPNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS CRCEGCKNAF GRREGLGPLS IEEAKQGNEE
601: NSACVKEEKK EDDNNQLVIC PAANPAPAEN VLTTPSAMDV RPLASRPPSS SKRPRSTTKA LGHPSRLCNS QAPLKTDTLL SPFENYAEIM FGVGTSDSLK
701: GGLSPQTSVK VVSPNKKRVS PPRIGTGLSP ICKSGRKLIL KSIPSFPSLC GDVNNVDTKT TSPAP
101: KCKNIVSENC SFTCHLNQGP IDSSANRSNS TSKLPQTIQF VGDSSECGKN QSADGKKDLA RDQESIELEG VLLDHTGPDK IDSSQPGRIV HENQQCEQQK
201: DGFTAYDGDY LITHESSMDM LRLAPPCEAD TQLVNETLNA DNVFSGNSLL TDGPSGSYIN NAAHDPNLYW DGTVEGPTTD YTPQLLSGAC QSQSVSNDQI
301: CNAVEEPSDH IPIDQSALSQ NMRGMRRRCL FNEKAGAVNK AAKKTSDRHS ANTTTPRCKT NSGDKPVRTP PCALPGIGLH LNALAPISTD KIVPQAAQST
401: INQASNFPCA VSSSTAEPNI VNEDSSQAIV VANADESGQG SPKKKRHKFD DGDGTSCKRC SCKKSKCLKL YCECFHAGVF CSEPCSCQGC LNKPSNMEIV
501: LSTREQIESR NPLAFAPKVI RTSEPGQELG EYPNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS CRCEGCKNAF GRREGLGPLS IEEAKQGNEE
601: NSACVKEEKK EDDNNQLVIC PAANPAPAEN VLTTPSAMDV RPLASRPPSS SKRPRSTTKA LGHPSRLCNS QAPLKTDTLL SPFENYAEIM FGVGTSDSLK
701: GGLSPQTSVK VVSPNKKRVS PPRIGTGLSP ICKSGRKLIL KSIPSFPSLC GDVNNVDTKT TSPAP
001: MMDNVKKKSD TPDWETLIAA TTELIYGSPR ESEAFSCLLK KTSNSEARLR GSITATSVAV TNTDVVNNES ESVDALSILH RGVRRRCLDF EVKGNNQQTL
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH
Arabidopsis Description
TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.