Factsheet for Os12t0605500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G065300.1	Wheat	nucleus	70.79	70.33
TraesCS5A01G053800.1	Wheat	nucleus	70.66	70.2
TraesCS5B01G062400.1	Wheat	nucleus	70.53	70.07
HORVU5Hr1G012950.1	Barley	nucleus	70.26	69.71
EES17353	Sorghum	nucleus	66.84	66.23
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	67.37	61.24
Os03t0638300-01	Rice	cytosol	8.95	60.18
Zm00001d031009_P004	Maize	golgi, plasma membrane	65.79	60.1
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	16.58	44.06
CDY54822	Canola	cytosol, plastid	26.97	37.34
GSMUA_Achr9P10600_001	Banana	nucleus	35.66	36.72
CDY67857	Canola	nucleus, plastid	29.08	36.59
CDY10668	Canola	nucleus, plastid	27.63	36.59
Bra023810.1-P	Field mustard	nucleus, plastid	28.16	36.15
Bra036900.1-P	Field mustard	nucleus, plastid	30.66	36.12
CDY29770	Canola	nucleus, plastid	30.66	36.01
CDY64242	Canola	nucleus	12.5	35.98
CDY42785	Canola	nucleus, plastid	31.05	35.92
AT4G14770.1	Thale cress	nucleus	31.71	35.76
CDY64240	Canola	cytosol, plastid	28.03	35.74
Bra033920.1-P	Field mustard	plastid	26.71	35.3
AT3G22760.1	Thale cress	nucleus	28.16	35.14
Os07t0176200-01	Rice	nucleus	36.05	35.04
VIT_05s0020g03880.t01	Wine grape	nucleus	34.74	34.6
GSMUA_Achr8P20460_001	Banana	nucleus	36.32	34.29
GSMUA_Achr9P25670_001	Banana	nucleus	37.24	34.14
KRH27657	Soybean	nucleus	33.42	32.82
KRH77830	Soybean	nucleus	33.42	32.82
KRG91344	Soybean	nucleus	33.42	32.82
CDY54821	Canola	nucleus	29.21	32.7
AT3G22780.1	Thale cress	nucleus	29.74	32.52
KRH35487	Soybean	nucleus	32.5	32.5
VIT_14s0030g01800.t01	Wine grape	nucleus	34.08	32.13
Solyc09g082500.2.1	Tomato	nucleus	33.03	30.28
PGSC0003DMT400082098	Potato	nucleus	32.63	30.02
Bra033919.1-P	Field mustard	nucleus	29.21	29.68
CDY10669	Canola	nucleus	29.08	29.55
Os05t0509400-01	Rice	cytosol, nucleus, plasma membrane, plastid	13.68	27.81
Os12t0605300-01	Rice	nucleus	14.74	27.52
Os06t0332700-00	Rice	nucleus	9.21	23.1
Os02t0274600-00	Rice	cytosol, nucleus	11.18	19.45
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	9.34	19.24
Os08t0363900-00	Rice	cytosol	8.82	18.87
CDX92957	Canola	nucleus, plastid	29.34	18.34
CDX94892	Canola	nucleus, plastid	29.74	18.21
Bra001884.1-P	Field mustard	nucleus, plastid	29.21	18.15
Os01t0761100-01	Rice	cytosol, nucleus, plastid	13.03	15.99

Protein Annotations

EMBL:AK073942	EnsemblPlants:Os12t0605500-01	EnsemblPlantsGene:Os12g0605500	EntrezGene:4352740	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634
ProteinID:ABA99828.1	ProteinID:ABA99829.1	ProteinID:BAF30244.1	ProteinID:BAT17983.1	RefSeq:XP_015620275.1	SEG:seg
SMART:SM01114	UniParc:UPI0000680C89	UniProt:Q2QMG6	MapMan:15.5.9	:	:

Description

Tesmin/TSO1-like, CXC domain containing protein. (Os12t0605500-01)

Coordinates

chr12:-:25561790..25569052

Molecular Weight (calculated)

82029.0 Da

IEP (calculated)

6.990

GRAVY (calculated)

-0.638

Length

760 amino acids

Sequence
(BLAST)

001: MDTPDRPPRA AATAAVEDSP VFNFINSLSP IPPPKPSDSA HNVQLFKSSD LAPVSSIFAS PHVNPAKESK LPIREDSVQL SRESHSPNSV RTRTGATSSI
101: IRMIRCKNIV SENCSITCYL NDSTSSKASQ PIQLCGGSAE SDTNQNTDGK KDPTTEQDRT DIEFVLLDQC GPEKMDSSQS GNNACENQLS EQHKDELGSF
201: DGGYMFAHQP HSDMLRLAPP FESETQLVNE TLQTDNVYCE TLLTDGPSGS YTQNSAPDPH LYWAGAVEGC ATDYTPQMLP GACQSQLVPN DQINNKLNEP
301: SDYMPMDHNV SSQNLRGMRR RCLFNEKSGA ANEGAKNSSA RHSTNSTTPR RKISSSDNNL KTLRTPPCAL PGIGLHLNAL ATVPKDKMVP HNDIQSSLNQ
401: ASNVPSAVGS SPPTDDPHTI NDDSSQTAVV AYVGESSQGS PKKKRHKFDN GDGTSCKRCS CKKSKCLKLY CECFHAGVFC SEPCSCQGCL NMPSNMETVL
501: STREQIESRN PLAFAPKVIR TEPGQELADD SNKTPASSRH KRGCNCKKSS CLKKYCECYQ GGVGCSVSCR CEGCKNAFGR REGVALLGIE EAKRGCEEKD
601: GGVKEETTDN DKQLVIYQDS INLTPAESVL ATPSVVDYRP LVALPPLSSK KPRSSTKLGG YSSRLEGHLK SDILLSPFES YAEMMLGDGT SNVLKGESSP
701: QTSVKVVSPN KKRVSPPRIG TGLSPICKSG RKLILKSIPS FPSLGVDITN EDPNTSSLAP

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.