Factsheet for Os06t0332700-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G081540.1	Barley	plastid	65.02	67.47
EER89807	Sorghum	cytosol	69.64	41.45
TraesCS7B01G242300.1	Wheat	nucleus	65.68	41.03
TraesCS7D01G338500.1	Wheat	nucleus, plastid	65.35	40.74
TraesCS7A01G341100.2	Wheat	nucleus, plastid	65.35	40.74
Zm00001d037461_P001	Maize	cytosol	67.99	40.31
Os02t0274600-00	Rice	cytosol, nucleus	46.86	32.49
Os03t0638300-01	Rice	cytosol	10.56	28.32
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	29.37	24.12
Os08t0363900-00	Rice	cytosol	27.72	23.66
Bra036551.1-P	Field mustard	nucleus	35.31	23.46
CDY19795	Canola	nucleus	34.32	22.86
Bra009859.1-P	Field mustard	nucleus	38.28	22.79
CDX88196	Canola	nucleus	38.28	22.75
CDY65712	Canola	nucleus	34.32	22.71
CDX80536	Canola	nucleus	37.95	22.16
AT5G25790.2	Thale cress	nucleus	35.97	21.63
Os01t0761100-01	Rice	cytosol, nucleus, plastid	43.89	21.49
CDY05340	Canola	nucleus	32.01	20.29
CDY28377	Canola	nucleus	21.45	19.82
AT3G16160.1	Thale cress	nucleus	23.76	19.57
CDY20184	Canola	cytosol	21.45	19.12
Bra021165.1-P	Field mustard	nucleus	20.46	19.02
Os12t0605300-01	Rice	nucleus	22.44	16.71
Os05t0509400-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.46	16.58
Os07t0176200-01	Rice	nucleus	25.08	9.72
Os12t0605500-01	Rice	nucleus	23.1	9.21

Protein Annotations

EnsemblPlants:Os06t0332700-00	EnsemblPlantsGene:Os06g0332700	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF29	PFAM:PF03638	PFscan:PS51634	ProteinID:BAS97570.1	SEG:seg
SMART:SM01114	UniParc:UPI0003939447	UniProt:A0A0P0WWF9	MapMan:15.5.9	:	:

Description

Hypothetical conserved gene. (Os06t0332700-00)

Coordinates

chr6:-:13185273..13189310

Molecular Weight (calculated)

33349.3 Da

IEP (calculated)

8.719

GRAVY (calculated)

-0.934

Length

303 amino acids

Sequence
(BLAST)

001: MMEKKQMQQQ PQQPESEPEP AAPAPAAAAA EAKATPPQPQ PQQKPAAPVQ PQMPTPRPWP VAFIPPKPVA EIKSTPSTKR KKHCNCKNSQ CLKLYCECFA
101: AGLYCDGCHC KQCGNYVGNE SARQEAINST KQRNPKAFQP KIENGSNALN LRKDDAGAPA SLPKHNKGCH CKKSGCLKKY CECFQANILC SKNCKCQDCK
201: NFEGSEELRL ITQGDNSSDR NNIQHAANVA LNGAIGSSGY RYSPVRRKRP PEDHLYQKLN GEGSTMQTQF QEANHVDSSE ITSSTGLEGC YSNYQSRSNV
301: VYR

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.