Factsheet for Bra021165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20184	Canola	cytosol	95.4	91.47
AT3G16160.1	Thale cress	nucleus	61.96	54.89
Bra025590.1-P	Field mustard	cytosol	12.88	29.58
HORVU7Hr1G081540.1	Barley	plastid	21.17	23.63
Bra036551.1-P	Field mustard	nucleus	29.45	21.05
Os06t0332700-00	Rice	nucleus	19.02	20.46
Bra041042.1-P	Field mustard	nucleus	30.06	19.48
Os02t0274600-00	Rice	cytosol, nucleus	24.85	18.54
Bra009859.1-P	Field mustard	nucleus	28.53	18.27
TraesCS7B01G242300.1	Wheat	nucleus	26.69	17.94
TraesCS7D01G338500.1	Wheat	nucleus, plastid	26.69	17.9
TraesCS7A01G341100.2	Wheat	nucleus, plastid	26.69	17.9
EER89807	Sorghum	cytosol	27.61	17.68
Zm00001d037461_P001	Maize	cytosol	27.61	17.61
Bra010348.1-P	Field mustard	nucleus	30.06	17.07
Bra024171.1-P	Field mustard	nucleus	28.83	17.03
Bra011075.1-P	Field mustard	nucleus	26.99	16.67
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	18.71	16.53
Os08t0363900-00	Rice	cytosol	17.79	16.34
TraesCS2A01G122300.2	Wheat	plastid	26.38	14.63
TraesCS2B01G144400.2	Wheat	plastid	26.38	14.6
Zm00001d015990_P001	Maize	nucleus	23.31	14.34
TraesCS2D01G125000.1	Wheat	plastid	25.77	14.29
HORVU2Hr1G021360.2	Barley	plastid	25.77	13.79
KXG30022	Sorghum	nucleus, plastid	22.7	13.63
Bra041164.1-P	Field mustard	nucleus	3.99	13.13
Bra023807.1-P	Field mustard	nucleus	7.06	12.3
Bra033920.1-P	Field mustard	plastid	19.63	11.13
Bra023810.1-P	Field mustard	nucleus, plastid	19.33	10.64
Bra036900.1-P	Field mustard	nucleus, plastid	20.86	10.54
Bra001128.1-P	Field mustard	nucleus	16.26	10.17
Bra033919.1-P	Field mustard	nucleus	21.47	9.36
Bra001884.1-P	Field mustard	nucleus, plastid	21.47	5.72

Protein Annotations

EnsemblPlants:Bra021165.1	EnsemblPlants:Bra021165.1-P	EnsemblPlantsGene:Bra021165	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	SEG:seg
SMART:SM01114	UniParc:UPI0002543BD0	UniProt:M4DXB9	MapMan:15.5.9	:	:

Description

AT3G16160 (E=8e-077) | transcription factor

Coordinates

chrA01:+:23631001..23632564

Molecular Weight (calculated)

36549.1 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.708

Length

326 amino acids

Sequence
(BLAST)

001: MTSRGEREGN NNTDHQDGVT GRKQKRCRCR QSKCLKLYCD CFASGVLCND CDCADCHNNT DNSYLREAAV LNLLDRNPNA FNGKPPSFSI DKQAAADTKH
101: GLLSRGCKCK RTKCLKKYCE CFQANALCSD NCKCINCENV SALGATNNTP DSLICAPQSS LQWNSCPAPL SSMPDNYVLD SLESPMYSST KLPYKKKRSR
201: LGCTTPKLVP DLGDLRSLLL AASESATANA GLQDKNRIRI KPDDKELWNE SESGIVEEED IQSCGRLIQL IDAQYNDEVD PQTKTSFPER DAYMEQERAV
301: LETFRDCLHK YMKKIGFMKG TNYYHF

Best Arabidopsis Sequence Match ( AT3G16160.1 )
(BLAST)

001: MTGNADSGKI ATEKDPRKLV FTKLEVSPVF RESPVKELPL FPPISREHSE AKDKTDEEGI TSRKHKGCRC KQSKCLKLYC DCFASGVVCT DCDCVDCHNN
101: SEKCDAREAA MVNVLGRNPN AFSEKALGSL TDNQCKAAPD TKPGLLSRGC KCKRTRCLKK YCECFQANLL CSDNCKCINC KNVSEAFQPP AFSAHNSPQV
201: YRRRRDRELT EWNSCPAPLF SIPDNSIQNA LGSPMSCSPK LPYRKKRSLM GYTSTLLPDL GDLCSLLVAA SESATTTAED QNRIFTKPDD KEAIELSSES
301: ESRNVEEEIQ SRGRLIELID VQYNGEEDSQ CKTKTSVNET DIYMEQERAV LETFRDCLQK FIKSRLES

Arabidopsis Description

TCX8Protein tesmin/TSO1-like CXC 8 [Source:UniProtKB/Swiss-Prot;Acc:Q700D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.