Factsheet for Bra036900.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29770	Canola	nucleus, plastid	97.67	97.37
CDY42785	Canola	nucleus, plastid	95.35	93.61
AT4G14770.1	Thale cress	nucleus	77.98	74.63
Bra023810.1-P	Field mustard	nucleus, plastid	54.42	59.29
Os03t0638300-01	Rice	cytosol	10.08	57.52
Bra033920.1-P	Field mustard	plastid	48.06	53.91
Bra023807.1-P	Field mustard	nucleus	13.64	47.06
Bra033919.1-P	Field mustard	nucleus	52.4	45.19
KRH35487	Soybean	nucleus	46.98	39.87
KRH77830	Soybean	nucleus	47.75	39.79
KRH27657	Soybean	nucleus	47.6	39.66
KRG91344	Soybean	nucleus	47.29	39.41
PGSC0003DMT400082098	Potato	nucleus	47.44	37.05
Solyc09g082500.2.1	Tomato	nucleus	47.6	37.03
VIT_14s0030g01800.t01	Wine grape	nucleus	44.34	35.48
GSMUA_Achr9P10600_001	Banana	nucleus	38.45	33.6
GSMUA_Achr8P20460_001	Banana	nucleus	41.24	33.04
Bra025590.1-P	Field mustard	cytosol	6.98	31.69
OQU88523	Sorghum	nucleus	37.52	31.19
Bra001128.1-P	Field mustard	nucleus	25.12	31.09
TraesCS4D01G026100.1	Wheat	nucleus	37.83	31.0
TraesCS5D01G065300.1	Wheat	nucleus	36.74	30.98
TraesCS5A01G053800.1	Wheat	nucleus	36.74	30.98
HORVU5Hr1G012950.1	Barley	nucleus	36.59	30.81
Os12t0605500-01	Rice	nucleus	36.12	30.66
TraesCS5B01G062400.1	Wheat	nucleus	36.28	30.59
Os07t0176200-01	Rice	nucleus	37.05	30.56
TraesCS4B01G028500.1	Wheat	nucleus	36.9	30.16
GSMUA_Achr9P25670_001	Banana	nucleus	38.6	30.04
EES17353	Sorghum	nucleus	35.04	29.47
TraesCS4A01G284600.2	Wheat	nucleus	37.98	29.27
Zm00001d018930_P003	Maize	nucleus	36.28	28.33
Bra001884.1-P	Field mustard	nucleus, plastid	52.56	27.72
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	35.66	27.51
EER93767	Sorghum	nucleus	31.32	27.04
Zm00001d031009_P004	Maize	golgi, plasma membrane	34.26	26.56
HORVU4Hr1G004280.15	Barley	nucleus, plastid	37.21	26.0
Zm00001d033274_P005	Maize	nucleus	28.53	25.07
Bra041164.1-P	Field mustard	nucleus	3.41	22.22
Bra036551.1-P	Field mustard	nucleus	14.88	21.05
Bra021165.1-P	Field mustard	nucleus	10.54	20.86
Bra041042.1-P	Field mustard	nucleus	15.66	20.08
Bra009859.1-P	Field mustard	nucleus	15.04	19.06
Bra011075.1-P	Field mustard	nucleus	14.57	17.8
Bra010348.1-P	Field mustard	nucleus	15.66	17.6
Bra024171.1-P	Field mustard	nucleus	14.42	16.85

Protein Annotations

MapMan:15.5.9	EnsemblPlantsGene:Bra036900	EnsemblPlants:Bra036900.1	EnsemblPlants:Bra036900.1-P	InterPro:CRC	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0043565	InterPro:IPR005172
InterPro:Lin-54_fam	UniProt:M4F740	PFAM:PF03638	PFscan:PS51634	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21
SMART:SM01114	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI000254500A	SEG:seg	:	:

Description

AT4G14770 (E=4e-231) TCX2, ATTCX2 | TCX2 (TESMIN/TSO1-LIKE CXC 2); transcription factor

Coordinates

chrA01:+:12230963..12234310

Molecular Weight (calculated)

71103.2 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.693

Length

645 amino acids

Sequence
(BLAST)

001: MDTPQKSITQ IETPVSKSRF EDSPVFNYIN SLSPIRPVKS IPNPHQFSTL NFTSPPSVFT SPHLTSSHKE SRFFKTHHPS PDPTILVQES PDDSKSNEEA
101: AAEADATTEF NIDASTEMEQ PQIVKYDVKE TNLDETTDLS LVPYASPPRK ENGSASEDAP GMEMYDNVQG KNETPDWDRL IADSSEFLIF SSPNDSEAFR
201: CLMMQRASPS QAPSVMMPTM QPGSINEPES SNASPYGAVS VLHRGIRRRC LDFEMPGNKQ TSSENNTASR CVVPSIGLHL NALLMSTKDC TTNNTTHDYS
301: CSEKYQVGLQ GSSSTLQETL DQTETETRED VPVEPTLEEL HLSSPKKKRQ LEAGEGESCK RCNCKKSKCL KLYCECFAAG VYCIEPCSCI DCFNKPIHED
401: TVLATRKQIE SRNPLAFAPK VIKSSDLVLE TGDDASKTPA SARHKRGCNC KKSNCLKKYC ECFQGGVGCS INCRCEGCKN AFGRKDGSAI VDMEAEQEEE
501: NETSVKNRRA KTQENSEVYL MRKEESSALP ATPMSVYRQQ LVQLKNMMPP PQSVLGVGSS SSGMFNSQYT RKPEMKSLET VAEDGAEEMP EILSHSSIDN
601: INAVSPNGKR VSPPHLDSSS SGRRSGGRKL ILQSIPTFPS LTPQH

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.