Factsheet for Bra009859.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88196	Canola	nucleus	98.23	98.04
CDX80536	Canola	nucleus	91.75	89.98
Bra036551.1-P	Field mustard	nucleus	66.01	73.68
AT5G25790.2	Thale cress	nucleus	62.67	63.29
Bra025590.1-P	Field mustard	cytosol	16.31	58.45
HORVU7Hr1G081540.1	Barley	plastid	22.79	39.73
Os06t0332700-00	Rice	nucleus	22.79	38.28
Bra041042.1-P	Field mustard	nucleus	36.35	36.78
Bra041164.1-P	Field mustard	nucleus	6.68	34.34
Bra011075.1-P	Field mustard	nucleus	35.36	34.09
Bra010348.1-P	Field mustard	nucleus	36.74	32.58
Bra024171.1-P	Field mustard	nucleus	34.97	32.25
Os02t0274600-00	Rice	cytosol, nucleus	26.92	31.35
TraesCS7D01G338500.1	Wheat	nucleus, plastid	28.68	30.04
TraesCS7B01G242300.1	Wheat	nucleus	28.29	29.69
TraesCS7A01G341100.2	Wheat	nucleus, plastid	28.29	29.63
EER89807	Sorghum	cytosol	29.27	29.27
Zm00001d037461_P001	Maize	cytosol	28.88	28.77
Bra021165.1-P	Field mustard	nucleus	18.27	28.53
Zm00001d015990_P001	Maize	nucleus	27.5	26.42
KXG30022	Sorghum	nucleus, plastid	28.09	26.34
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	18.86	26.02
Os08t0363900-00	Rice	cytosol	18.07	25.92
TraesCS2B01G144400.2	Wheat	plastid	27.5	23.77
HORVU2Hr1G021360.2	Barley	plastid	28.09	23.48
TraesCS2A01G122300.2	Wheat	plastid	27.11	23.47
TraesCS2D01G125000.1	Wheat	plastid	26.72	23.13
Bra023807.1-P	Field mustard	nucleus	7.07	19.25
Bra033920.1-P	Field mustard	plastid	18.47	16.35
Bra023810.1-P	Field mustard	nucleus, plastid	18.66	16.05
Bra036900.1-P	Field mustard	nucleus, plastid	19.06	15.04
Bra001128.1-P	Field mustard	nucleus	14.34	14.01
Bra033919.1-P	Field mustard	nucleus	19.06	12.97
Bra001884.1-P	Field mustard	nucleus, plastid	19.65	8.18

Protein Annotations

EnsemblPlants:Bra009859.1	EnsemblPlants:Bra009859.1-P	EnsemblPlantsGene:Bra009859	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	ncoils:Coil	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634
SEG:seg	SMART:SM01114	UniParc:UPI000253F355	UniProt:M4D061	MapMan:15.5.9	:

Description

AT5G25790 (E=6e-154) | transcription factor

Coordinates

chrA06:-:17728398..17730864

Molecular Weight (calculated)

56506.6 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.892

Length

509 amino acids

Sequence
(BLAST)

001: MEKSDHDLSS NQNPLARQLD FSVPAAAAET KMIDSSQETE KKQSQSLLLD SQSYLEDQRD EELSESSEPT EEQHRLGVKS LEEPSATEDV TPPPQKPPIH
101: RFGHPLEKCR VSKQEQMEAE SKDGTPSKQK HCNCKASRCL KLYCECFASG SYCNGCNCVN CLNNLENESA RQEAITGTLE RNPDAFKPKI AGSPHGINDL
201: QEDVRQLLIL GKHSKGCHCK KSGCLKKYCE CYQANVLCSE NCRCQDCKNF EGSEERSALL HGSHHVSETY IQQTTNAALS RAVSTSGFLN TPESRKRKSK
301: DASSAVPHLV QNQAVNQVIG NGDTSLFSIP NNKAVCGSPT CTYRSSLSNT IQPRHVKDLC TLLVATSLDV ANKYSDKRRK HEKDPSLDPA QRDANEINDS
401: PDCVLDLTRM DEKPMSPATR ALMCDDEHVI TSEKEASARV KTSEEKEDAD TSSEIYLEKE RQILSSFRDF LIQLSNRGSI KGANTKTSTN PSRKEPQDEE
501: QSHRDSSLG

Best Arabidopsis Sequence Match ( AT5G25790.1 )
(BLAST)

001: MEDLSNQNLL PRQSDISIPA EKMDSFQKSL EPPPCSPVKS SQQSETEVTP PQKPPLHQFG HNQVQKNRVS NQDPSTSRRH NEVESKENTP NKQQKHCNCK
101: NSKCLKLYCE CFASGSYCNG CNCVNCHNKL ENESSRQVAI SGILERNPDA FKPKIAGSPH GMKDLQENVQ QVLLIGKHSK GCHCRKSGCL KKYCECYQAN
201: ILCSENCRCQ DCKNFEGSEE RKALLHGSQV SDTYIQQMTN AAVNRAIDMS AYLYPPESRK RKSKDISDSV VSSYGVQYQR ANHVRRNGEN SLFSLPNNKA
301: VSGSTTSAYR SSWSNTFQPH HVRELCSLLV SNSVDVANKL SDKGRKNDKG PSSLDGAQRV ANEINDSPDC VLDANRMDEK PISPATRALM CDEEHEIGSE
401: KETSARVKTS QEKEDTDTSS GIYLEQERQI LSIFRDYLIQ LSNRARINGK NIKSNTNPS

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT5G25790]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.