Factsheet for Bra001884.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92957	Canola	nucleus, plastid	94.6	95.15
Bra023807.1-P	Field mustard	nucleus	10.87	71.12
AT3G22780.1	Thale cress	nucleus	39.33	69.21
Bra033919.1-P	Field mustard	nucleus	40.07	65.51
Bra036900.1-P	Field mustard	nucleus, plastid	27.72	52.56
Os03t0638300-01	Rice	cytosol	4.82	52.21
Bra023810.1-P	Field mustard	nucleus, plastid	24.69	51.01
Bra033920.1-P	Field mustard	plastid	22.24	47.3
PGSC0003DMT400082098	Potato	nucleus	26.08	38.62
Solyc09g082500.2.1	Tomato	nucleus	26.08	38.48
KRH35487	Soybean	nucleus	23.55	37.89
KRH77830	Soybean	nucleus	23.88	37.73
KRH27657	Soybean	nucleus	23.63	37.34
KRG91344	Soybean	nucleus	23.55	37.21
VIT_14s0030g01800.t01	Wine grape	nucleus	22.98	34.86
GSMUA_Achr9P10600_001	Banana	nucleus	19.95	33.06
Bra025590.1-P	Field mustard	cytosol	3.76	32.39
GSMUA_Achr8P20460_001	Banana	nucleus	20.52	31.18
Bra001128.1-P	Field mustard	nucleus	13.0	30.52
GSMUA_Achr9P25670_001	Banana	nucleus	20.44	30.16
TraesCS5D01G065300.1	Wheat	nucleus	18.64	29.8
HORVU5Hr1G012950.1	Barley	nucleus	18.56	29.63
TraesCS5B01G062400.1	Wheat	nucleus	18.48	29.54
TraesCS5A01G053800.1	Wheat	nucleus	18.4	29.41
TraesCS4D01G026100.1	Wheat	nucleus	18.89	29.35
OQU88523	Sorghum	nucleus	18.56	29.25
Os12t0605500-01	Rice	nucleus	18.15	29.21
Os07t0176200-01	Rice	nucleus	18.64	29.16
TraesCS4B01G028500.1	Wheat	nucleus	18.32	28.39
EES17353	Sorghum	nucleus	17.66	28.16
TraesCS4A01G284600.2	Wheat	nucleus	18.72	27.36
Zm00001d018930_P003	Maize	nucleus	18.32	27.12
Zm00001d031009_P004	Maize	golgi, plasma membrane	17.58	25.84
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	17.66	25.84
EER93767	Sorghum	nucleus	15.62	25.57
Bra041164.1-P	Field mustard	nucleus	2.04	25.25
HORVU4Hr1G004280.15	Barley	nucleus, plastid	18.72	24.81
Zm00001d033274_P005	Maize	nucleus	14.8	24.66
Bra021165.1-P	Field mustard	nucleus	5.72	21.47
Bra036551.1-P	Field mustard	nucleus	7.52	20.18
Bra041042.1-P	Field mustard	nucleus	8.18	19.88
Bra009859.1-P	Field mustard	nucleus	8.18	19.65
Bra011075.1-P	Field mustard	nucleus	7.85	18.18
Bra024171.1-P	Field mustard	nucleus	8.01	17.75
Bra010348.1-P	Field mustard	nucleus	8.26	17.6

Protein Annotations

EnsemblPlants:Bra001884.1	EnsemblPlants:Bra001884.1-P	EnsemblPlantsGene:Bra001884	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	SEG:seg
SMART:SM01114	UniParc:UPI0002540730	UniProt:M4CCF4	MapMan:15.5.9	:	:

Description

AT3G22780 (E=3e-234) TSO1, ATTSO1 | TSO1 (CHINESE FOR 'UGLY'); transcription factor

Coordinates

chrA03:+:19126128..19132768

Molecular Weight (calculated)

134474.0 Da

IEP (calculated)

7.085

GRAVY (calculated)

-0.662

Length

1223 amino acids

Sequence
(BLAST)

0001: MQNSPVFNYI NNLSPIKPVR SIPIAQTFGS LSPSVYTPPH KGSRFKSHTY FSDPAKELVE EALLETVPPK ILKNDCISTP PSRAAANDGS CGDGKTDLQK
0101: LCDGNVKRKS DTPDWETQFP DTPEMLIYDT LNDSEADRCF LPASSDLKRR SCGGTKPRLE PVSNSKELAD ALHRGVRRRL LDFEMPDNQT SEKSSSSCVV
0201: PPSTGLHLNT AFAMSSKDTN EYSLSANIKV GLQNSTPPVL HSHDILRENE TGEAAGQSVV EEIQKSSLAL VEMNQSSPKK KRLKSDQAGE GESSCKRCHC
0301: KKSKCLKLYC ECFASGVYCI VSCSCVDCFN KPIHEDTVLA TRKQIESRNP IAFAPKVIRN TDSSIMEAGV DASKTPASVR HKRGCNCKKS NCVKKYCECY
0401: QSGVGCSINC RCEGCKNAFG KKDVSSFVGM DIKQDGESKT GQTQQNNELF SYVPLPPSTP MSLRQPLAQL PISSNNMLLP QQSQQLHGAS GSFLYENQSF
0501: RKQGMGLLSR TETITEDIEN VIPSPITNIN AVSPNSKRVS LPHLDPPVLT PRRRNAAWKM DNENSQKESA SKIETPTPKS NFEESPVFNF INNLSPFEPV
0601: KSFSSVQTFS SLSFTSPPPV FTSPHPTFHR ESRFFRCQNS VDRSKALDSK EEVVADVDLN KEATLEDDEE TSCELPQILS SDSQSPPHHG EDIVTQVLLP
0701: PPGEDNNGSS SEDVKMRLLN ILDAQEENGT PGSRRLMADA AELLVFRSPN DSEAFTCLVD QISSSERRFC AGVKLPTQQH DIIPANGSTN DNEPLAVVPN
0801: QPVSNVHRGS MRRRCLDFEI PRKRKKDDDE QTVSDNNKAE SSSSKCGLPG IGLHLNAIAM ASRNTKISIT HEYSSSGEIQ NTFSGSIAPV HSQDTVPEAL
0901: EQAESQPGEE SAVEEATELI PDSLQKKKQV LEGGEGESSC KRCNCKKSKC LKLYCECFAA GVYCIDPCSC VDCFNKPIHE DTVLATRKQI ESRNPLAFAP
1001: KVIRNSDSIM DTSDDASKTP ASARHKRGCN CKKSNCLKKY CECYQSGVGC SINCRCEGCK NAFGRKDAYL HAIMESKQEE DHETYEKRTA DMSKEAERNP
1101: SSEQPLTPLP PYKHLVVHQP FLPRNKLPPT QFSLGAGSSS FRKPEGESGN EKKPLETVIE DKTEIMPDIL NTSPIKANSP NSKRVSPAHI GSSEPGSILG
1201: KRSNGRKLIL RSIPAFPSLN HNQ

Best Arabidopsis Sequence Match ( AT3G22780.1 )
(BLAST)

001: MDKSQKNPTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF TSPHVISHRE SRFFRCHNSV DRSKHLESLD GSAVKGEVVV
101: PLVEDLNKEA SLEDEEETSV ETSSELPQIM KFDSQTSEHS DSPCTEDVVI EASSDPPRGD NGSSSEDVTM GLQNMLVVRE GNDTPGCGRL ISDATELLVF
201: RSPNDSEAFR CLVDKISSSE RRFCAGVKST KRPDINKDIP ANGSSNENQP LAVLPTNESV FNLHRGGMRR RCLDFEMPGK RKKDIVDDQQ SVCDNNVAGE
301: SSSSCVVPGI GLHLNAVAMS AKDSNISVIH GYSISGEIQK SFSGSTTPIQ SQDTVQETSD QAENEPVEEV PKALVFPELN LGSLKKKMRK SEQAGEGESC
401: KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIRNADSIM EASDDASKTP ASARHKRGCN CKKSNCMKKY
501: CECYQGGVGC SMNCRCEGCT NVFGRKDGSL LVIMESKLEE NQETYEKRIA KIQHNVEVSK EVEQNPSSDQ PSTPLPPYRH LVVHQPFLSK NRLPPTQFFL
601: GTGSSSFRKP NSDLAQSQNE KKPLETVTED KTEIMPEILL NSPIANIKAI SPNSKRVSPP QPGSSESGSI LRRRGNGRKL ILRSIPAFPS LNPNQ

Arabidopsis Description

TSO1CRC domain-containing protein TSO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.