CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033274_P005	Maize	nucleus	76.04	77.38
Os03t0638300-01	Rice	cytosol	8.97	59.29
EES17353	Sorghum	nucleus	40.83	39.77
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	14.99	39.16
CDY54822	Canola	cytosol, plastid	24.23	32.97
CDY10668	Canola	nucleus, plastid	25.03	32.58
CDY64242	Canola	nucleus	11.51	32.58
CDY67857	Canola	nucleus, plastid	26.24	32.45
Bra023810.1-P	Field mustard	nucleus, plastid	25.57	32.26
Bra033920.1-P	Field mustard	plastid	24.77	32.17
CDY64240	Canola	cytosol, plastid	25.3	31.71
AT3G22760.1	Thale cress	nucleus	25.7	31.53
CDY29770	Canola	nucleus, plastid	27.18	31.38
CDY42785	Canola	nucleus, plastid	27.58	31.35
Bra036900.1-P	Field mustard	nucleus, plastid	27.04	31.32
GSMUA_Achr9P10600_001	Banana	nucleus	30.52	30.89
AT4G14770.1	Thale cress	nucleus	27.58	30.56
VIT_05s0020g03880.t01	Wine grape	nucleus	31.06	30.41
GSMUA_Achr8P20460_001	Banana	nucleus	31.59	29.32
GSMUA_Achr9P25670_001	Banana	nucleus	32.53	29.31
OQU88523	Sorghum	nucleus	30.39	29.25
CDY54821	Canola	nucleus	26.24	28.87
KRH35487	Soybean	nucleus	29.05	28.55
KRH77830	Soybean	nucleus	29.32	28.29
AT3G22780.1	Thale cress	nucleus	26.24	28.2
KRH27657	Soybean	nucleus	29.05	28.04
KRG91344	Soybean	nucleus	28.78	27.78
VIT_14s0030g01800.t01	Wine grape	nucleus	29.85	27.67
EES19781	Sorghum	cytosol	12.99	27.02
Solyc09g082500.2.1	Tomato	nucleus	29.45	26.54
PGSC0003DMT400082098	Potato	nucleus	29.05	26.27
CDY10669	Canola	nucleus	25.97	25.94
Bra033919.1-P	Field mustard	nucleus	25.97	25.94
EES17352	Sorghum	nucleus	12.45	22.74
EER89807	Sorghum	cytosol	10.98	16.11
CDX92957	Canola	nucleus, plastid	26.1	16.04
CDX94892	Canola	nucleus, plastid	26.64	16.04
Bra001884.1-P	Field mustard	nucleus, plastid	25.57	15.62
KXG33424	Sorghum	nucleus	11.65	14.19
KXG30022	Sorghum	nucleus, plastid	10.17	14.0

Protein Annotations

EnsemblPlants:EER93767	EnsemblPlantsGene:SORBI_3001G159500	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:EER93767	ProteinID:EER93767.2
SEG:seg	SMART:SM01114	UniParc:UPI00081ABE59	UniProt:C5WRA4	MapMan:15.5.9	:

Description

hypothetical protein

Coordinates

chr1:+:13020660..13027654

Molecular Weight (calculated)

81129.1 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.579

Length

747 amino acids

Sequence
(BLAST)

001: MDAPESPPAG RPSSPAVALY EHSPIFDFIN SLSPIATPKP LGSTQNVQLK SLNLPPLSSI FTSPQVNQRK ESKSTIRDVK LSQELNPNCQ RNQMGTFSCI
101: ELSGSATLAS ENCISYEDAT NSPSKWLQST PFGSETLGDA KKQDTDGKTN HTEDVEQVKQ SSTYSDQNGL DQVDSSTSGR IVQENELAKQ DRNDLAPCSL
201: NHLITNCGTG NSVISISDLA LEAQQRSWKL RGDNVISSTS VLAVDRNFEN SPREHFVEPF GSYIQSAADD THVYCADAAA GVATNHDQEI LPAVIQNQLV
301: LNDYNFDTFK ANTDGTAISQ QQCGTHRRNL FKDKVGPSNK RVQNNSNIHH ASTCGNNYLK PVKPGIGLHL NTLPLNLSNM PLTINPPLLP EQTSPATVIS
401: SSETALYGSE VCTHVDDYSQ KTMTNADKSD QQSHKKRRRK LQNDDGKSCR HCSCKKSKCL KLYCACFAAK VYCSEFCSCQ GCSNNHMHEE AVSHIRKQTE
501: SRNPLAFAPT VTRKCGSVSE LGDDSNNTPA SARHKRGCNC RKSSCLKKYC ECFQSGVGCS ISCRCESCKN SFGKREGVLL LTTEKLKKGG EAKGTHGKEE
601: KLAFDKHHMI SQSGDLAATE NLLATPSLEP YRSSFLLPST CSKLPPSTVG LSSGLHNPRS PMKSDNLLSP FETRAAPMIL GNDFSDIQEL GLSCTTSVKV
701: VSPNKKRVAP LHIGTALSPM GSSSRKLVLK SIPSFPSLTG DADSEPH

Best Arabidopsis Sequence Match ( AT3G22780.1 )
(BLAST)

001: MDKSQKNPTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF TSPHVISHRE SRFFRCHNSV DRSKHLESLD GSAVKGEVVV
101: PLVEDLNKEA SLEDEEETSV ETSSELPQIM KFDSQTSEHS DSPCTEDVVI EASSDPPRGD NGSSSEDVTM GLQNMLVVRE GNDTPGCGRL ISDATELLVF
201: RSPNDSEAFR CLVDKISSSE RRFCAGVKST KRPDINKDIP ANGSSNENQP LAVLPTNESV FNLHRGGMRR RCLDFEMPGK RKKDIVDDQQ SVCDNNVAGE
301: SSSSCVVPGI GLHLNAVAMS AKDSNISVIH GYSISGEIQK SFSGSTTPIQ SQDTVQETSD QAENEPVEEV PKALVFPELN LGSLKKKMRK SEQAGEGESC
401: KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIRNADSIM EASDDASKTP ASARHKRGCN CKKSNCMKKY
501: CECYQGGVGC SMNCRCEGCT NVFGRKDGSL LVIMESKLEE NQETYEKRIA KIQHNVEVSK EVEQNPSSDQ PSTPLPPYRH LVVHQPFLSK NRLPPTQFFL
601: GTGSSSFRKP NSDLAQSQNE KKPLETVTED KTEIMPEILL NSPIANIKAI SPNSKRVSPP QPGSSESGSI LRRRGNGRKL ILRSIPAFPS LNPNQ

Arabidopsis Description

TSO1CRC domain-containing protein TSO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.