CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010713_P006	Maize	cytosol	81.06	79.73
Os05t0509400-01	Rice	cytosol, nucleus, plasma membrane, plastid	82.17	78.88
TraesCS1A01G327100.1	Wheat	plastid	77.16	74.46
TraesCS1D01G329200.1	Wheat	plastid	77.16	74.06
TraesCS1B01G340500.1	Wheat	cytosol, plastid	76.88	73.8
HORVU1Hr1G078000.1	Barley	plastid	78.55	68.28
EES17352	Sorghum	nucleus	40.11	35.21
CDX79489	Canola	cytosol	16.43	18.27
Bra001128.1-P	Field mustard	nucleus	18.94	13.05
CDX74164	Canola	nucleus	18.94	13.03
OQU88523	Sorghum	nucleus	28.13	13.02
EER93767	Sorghum	nucleus	27.02	12.99
EES17353	Sorghum	nucleus	26.18	12.26
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	18.38	12.15
AT3G04850.1	Thale cress	cytosol	21.17	11.89
EER89807	Sorghum	cytosol	16.16	11.39
KXG30022	Sorghum	nucleus, plastid	16.43	10.87
KXG33424	Sorghum	nucleus	16.71	9.79

Protein Annotations

EnsemblPlants:EES19781	EnsemblPlantsGene:SORBI_3009G191600	EntrezGene:8080093	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF44	PFAM:PF03638	PFscan:PS51634	ProteinID:EES19781
ProteinID:EES19781.1	RefSeq:XP_002441351.1	SEG:seg	SMART:SM01114	UniParc:UPI0001A88FF7	UniProt:C5Z0T2
MapMan:15.5.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:54359033..54362521

Molecular Weight (calculated)

40040.3 Da

IEP (calculated)

8.183

GRAVY (calculated)

-0.735

Length

359 amino acids

Sequence
(BLAST)

001: MEATPISVKP PSPALAAPPP ATLGPRDMPT HAVGGTELEP SSMNQLAIAP DPKRQRVEEA ADGNGCKHCA CKKSRCLKLY CPCFSGGGYC SDKCGCQPCF
101: NKEAFSETVQ TTRKVLLSRQ KRMSMKINRR PEANAEPMED AHHSSSSTPP RRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR CDDCQNPFGK NEGIIADDSK
201: RYLYTGADLD HSEGEHDFVV ERSPRLQSPI SKESSFHQTP PHLRVSSRDT HVFPQAISQW QALPRSWQHC ANKRNSNDRV MDDSANYKNS NHDWQLSKHE
301: DSYSISKCVQ ILNGMVELSQ VEKSVAPDVF LQPGNREIFI SLSGDVRAMW LKRKIQHLA

Best Arabidopsis Sequence Match ( AT3G22760.2 )
(BLAST)

001: MMDNVKKKSD TPDWETLIAA TTELIYGSPR ESEAFSCLLK KTSNSEARLR GSITATSVAV TNTDVVNNES ESVDALSILH RGVRRRCLDF EVKGNNQQTL
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.