CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001128.1-P	Field mustard	nucleus	95.02	95.2
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	87.55	84.16
AT3G04850.1	Thale cress	cytosol	64.56	52.74
CDY44573	Canola	cytosol	7.66	28.17
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	14.75	26.92
CDY54822	Canola	cytosol, plastid	28.16	26.78
CDY67857	Canola	nucleus, plastid	30.27	26.16
CDY10668	Canola	nucleus, plastid	28.74	26.13
CDY64240	Canola	cytosol, plastid	29.12	25.5
CDY71540	Canola	nucleus, plastid	12.84	25.28
CDY29770	Canola	nucleus, plastid	30.65	24.73
CDX79489	Canola	cytosol	15.13	24.46
CDY42785	Canola	nucleus, plastid	29.89	23.74
CDY67603	Canola	cytosol	12.64	23.0
CDY54821	Canola	nucleus	29.69	22.83
CDY10669	Canola	nucleus	29.31	20.45
TraesCS1D01G329200.1	Wheat	plastid	14.37	20.05
TraesCS1B01G340500.1	Wheat	cytosol, plastid	14.37	20.05
TraesCS1A01G327100.1	Wheat	plastid	14.18	19.89
Os05t0509400-01	Rice	cytosol, nucleus, plasma membrane, plastid	14.18	19.79
Zm00001d038660_P003	Maize	nucleus	13.41	19.44
EES19781	Sorghum	cytosol	13.03	18.94
HORVU1Hr1G078000.1	Barley	plastid	14.18	17.92
CDY64242	Canola	nucleus	9.0	17.8
Zm00001d031008_P001	Maize	nucleus	13.41	17.77
EES17352	Sorghum	nucleus	13.22	16.87
HORVU5Hr1G013160.11	Barley	nucleus, plastid	13.03	16.63
TraesCS5A01G054200.1	Wheat	nucleus, plastid	11.3	16.53
Zm00001d041444_P002	Maize	nucleus	12.45	16.5
TraesCS5D01G065500.1	Wheat	nucleus, plastid	11.3	16.43
TraesCS5B01G062200.1	Wheat	nucleus, plastid	11.3	16.39
CDY28377	Canola	nucleus	10.15	16.16
CDY19795	Canola	nucleus	13.79	15.82
Os12t0605300-01	Rice	nucleus	12.26	15.72
CDY20184	Canola	cytosol	10.15	15.59
CDY05340	Canola	nucleus	13.6	14.85
CDY05722	Canola	nucleus	13.79	14.55
CDY65712	Canola	nucleus	12.64	14.41
CDX88196	Canola	nucleus	13.79	14.12
CDX80536	Canola	nucleus	13.98	14.07
CDY31991	Canola	nucleus	13.6	14.03
CDY66476	Canola	nucleus	15.13	13.79
CDX97461	Canola	nucleus	14.94	13.78
CDX92907	Canola	nucleus	13.98	13.08
CDX94892	Canola	nucleus, plastid	30.84	12.97
CDY35239	Canola	nucleus	14.37	12.86
CDX92957	Canola	nucleus, plastid	29.5	12.66
Zm00001d010713_P006	Maize	cytosol	8.62	12.33
CDY06853	Canola	cytosol, nucleus, plastid	14.37	5.33

Protein Annotations

EnsemblPlants:CDX74164	EnsemblPlantsGene:GSBRNA2T00111926001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF46	PFAM:PF03638	PFscan:PS51634	ProteinID:CDX74164	ProteinID:CDX74164.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EF124A	MapMan:15.5.9	:	:

Description

BnaA03g28830D

Coordinates

chrLK031800:+:1616335..1618920

Molecular Weight (calculated)

57317.2 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.435

Length

522 amino acids

Sequence
(BLAST)

001: MDTPDKNRSS AVSYCNFEDS PVFQYINGLS PIEPVKADHA FHSFALASPS SLFSSPQIDC IKRQDVLVQL KCSGPEEEMA NVSETEAFKE QVKVAIELAS
101: SLRKGEDGCG SQMGSSDEVV VPMEAENEVI KQSGELCRRI NELDADSDMV IQTEEMEAET GSGEQEIPNG KDSRICSFTV VPQQFSNHSG NVVQPCSVQV
201: AAGALDTTLR SSSNVTAFDS TDKAEDDDEE ANLQLSSKQR SVRRRCLTFD LGGSYKRVPL RDSTNDLPLD VTSINEASSP QNCVDSSKQE TDEILPVPRT
301: IGLHLNALVN PYRNKITAKD GCVLSHAAEE FTTPVSTIRD LVACDNQIME EASERSMEGE RVEELGSCKR CRCKRSRCLK LYCDCFAAGL YCVEPCSCQN
401: CFNRPIHEDI VIRSRRNVEA RNPLAFAPKV VLTSASATYF GEESNKTPAS ARHMRGCNCK KSGCSKKYCE CYLVGVGCSA SCRCIGCKNI LCQTNEQFHL
501: PCAVESDAVT INEEAKDHCD YI

Best Arabidopsis Sequence Match ( AT3G04850.1 )
(BLAST)

001: MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPGRP ENILHSLVFT SPSSSSSLFC SPQLNSYRDS RFFIKRHRSL DLSSPVVLIG ETLKNSPDAL
101: WEEKLKCRPE KLENVSEPKP FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP LDFDADSDGV LHTDEMEAES
201: GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS
301: VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF
401: STPVSTKRDL VVFSDVKIME PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC SCQNCFNKPI HEDLVMKSRE
501: VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD
601: HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL

Arabidopsis Description

TCX4Protein tesmin/TSO1-like CXC 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.