CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041042.1-P	Field mustard	nucleus	99.21	99.8
CDY05722	Canola	nucleus	94.07	96.16
CDY44573	Canola	cytosol	19.76	70.42
CDY71540	Canola	nucleus, plastid	34.39	65.66
CDY67603	Canola	cytosol	36.17	63.76
AT2G20110.2	Thale cress	nucleus	72.53	63.49
CDX97461	Canola	nucleus	64.43	57.6
CDY35239	Canola	nucleus	65.81	57.12
CDY66476	Canola	nucleus	64.23	56.72
CDX92907	Canola	nucleus	60.67	55.02
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	54.15	52.29
KRH39300	Soybean	nucleus	56.32	50.98
PGSC0003DMT400000824	Potato	plastid	48.81	50.61
KRH41552	Soybean	nucleus	54.94	50.45
KRH60264	Soybean	nucleus	55.93	50.45
KRH48373	Soybean	nucleus	55.73	50.18
Solyc12g007180.1.1	Tomato	nucleus	47.83	48.59
CDY19795	Canola	nucleus	33.0	36.7
CDX88196	Canola	nucleus	36.76	36.47
CDY65712	Canola	nucleus	32.81	36.24
CDX80536	Canola	nucleus	36.17	35.26
CDY28377	Canola	nucleus	20.36	31.4
CDY05340	Canola	nucleus	29.25	30.96
CDY20184	Canola	cytosol	20.55	30.59
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	14.23	25.17
CDY06853	Canola	cytosol, nucleus, plastid	66.01	23.72
CDY64242	Canola	nucleus	10.47	20.08
CDX79489	Canola	cytosol	11.07	17.34
CDY64240	Canola	cytosol, plastid	19.37	16.44
CDY67857	Canola	nucleus, plastid	19.37	16.23
CDY54822	Canola	cytosol, plastid	17.59	16.21
CDY10668	Canola	nucleus, plastid	17.79	15.68
CDY29770	Canola	nucleus, plastid	19.96	15.61
CDY42785	Canola	nucleus, plastid	19.96	15.37
CDY54821	Canola	nucleus	19.76	14.73
CDX74164	Canola	nucleus	14.03	13.6
CDY10669	Canola	nucleus	19.17	12.97
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	13.83	12.89
CDX94892	Canola	nucleus, plastid	19.96	8.14
CDX92957	Canola	nucleus, plastid	19.17	7.98

Protein Annotations

EnsemblPlants:CDY31991	EnsemblPlantsGene:GSBRNA2T00050804001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY31991	ProteinID:CDY31991.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EF254D	UniProt:A0A078H2G3	MapMan:15.5.9	:

Description

BnaA07g00040DBnaA07g00040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2G3]

Coordinates

chrLK032283:-:443322..445667

Molecular Weight (calculated)

54261.7 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.618

Length

506 amino acids

Sequence
(BLAST)

001: MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP MIPPLQSPQV PIRLPKPESP KPKPRPVVVE AGDGTPMKKK HCNCKHSRCL
101: KLYCECFASG TYCDGCNCLN CFNNVDNEPA RREAIESTLE RNPNAFRPKI ASSPHDPRDN REVVGGVVML GKHHKGCHCK KSGCLKKYCE CFQANILCSD
201: NCRCLGCKNF EGSEDRLALF HGEHSHGAAY LQHANAAITG AVGSSGFASS PAPKRRKSQD IFFNQAAKDS SINRLGQGSS GKTTSSKPVA RHGGPSKVVY
301: RSLLADIIQP QDVKALCSVL VAVSEEAAKT STVKRLEDQT ETSLASSAQD NNNGTEIEKA ASGNEAGADE SNSDGSKGKS LSPETLALMC DEQDTMLMVA
401: ASSNCSVEPP NGQDQGYAEK EKIVLTKFRD CLNRIISYAE LKESKCSLSR MDTESPVHAA VKTEPVVQQG EVANGVSQTT IQQPSQLTSS YTQTQQPQAP
501: SEKKDL

Best Arabidopsis Sequence Match ( AT2G20110.3 )
(BLAST)

001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT HLHKTPALSE KKDL

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT2G20110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.