Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71540 | Canola | nucleus, plastid | 43.01 | 90.57 |
| CDY67603 | Canola | cytosol | 45.34 | 88.15 |
| CDY44573 | Canola | cytosol | 18.64 | 73.24 |
| CDX97461 | Canola | nucleus | 73.48 | 72.44 |
| CDY35239 | Canola | nucleus | 75.09 | 71.87 |
| CDY66476 | Canola | nucleus | 72.22 | 70.33 |
| AT4G29000.1 | Thale cress | nucleus | 70.97 | 65.67 |
| CDY05722 | Canola | nucleus | 54.3 | 61.21 |
| CDY31991 | Canola | nucleus | 55.02 | 60.67 |
| VIT_11s0016g03680.t01 | Wine grape | nucleus, plastid | 48.21 | 51.34 |
| KRH39300 | Soybean | nucleus | 49.82 | 49.73 |
| PGSC0003DMT400000824 | Potato | plastid | 43.19 | 49.39 |
| KRH48373 | Soybean | nucleus | 49.28 | 48.93 |
| KRH41552 | Soybean | nucleus | 47.85 | 48.46 |
| Solyc12g007180.1.1 | Tomato | nucleus | 43.01 | 48.19 |
| KRH60264 | Soybean | nucleus | 48.21 | 47.95 |
| CDY19795 | Canola | nucleus | 28.49 | 34.95 |
| CDY65712 | Canola | nucleus | 28.49 | 34.72 |
| CDX88196 | Canola | nucleus | 31.36 | 34.31 |
| CDX80536 | Canola | nucleus | 31.54 | 33.91 |
| CDY06853 | Canola | cytosol, nucleus, plastid | 77.42 | 30.68 |
| CDY05340 | Canola | nucleus | 25.63 | 29.92 |
| CDY28377 | Canola | nucleus | 17.2 | 29.27 |
| CDY20184 | Canola | cytosol | 17.56 | 28.82 |
| CDY34235 | Canola | endoplasmic reticulum, extracellular, vacuole | 12.19 | 23.78 |
| CDY64242 | Canola | nucleus | 8.6 | 18.18 |
| CDX79489 | Canola | cytosol | 10.04 | 17.34 |
| CDY54822 | Canola | cytosol, plastid | 15.23 | 15.48 |
| CDY64240 | Canola | cytosol, plastid | 16.49 | 15.44 |
| CDY67857 | Canola | nucleus, plastid | 16.49 | 15.23 |
| CDY42785 | Canola | nucleus, plastid | 17.38 | 14.76 |
| CDY29770 | Canola | nucleus, plastid | 17.03 | 14.68 |
| CDY10668 | Canola | nucleus, plastid | 15.05 | 14.63 |
| CDY54821 | Canola | nucleus | 17.56 | 14.43 |
| CDX74164 | Canola | nucleus | 13.08 | 13.98 |
| CDY40681 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 12.9 | 13.26 |
| CDY10669 | Canola | nucleus | 17.03 | 12.7 |
| CDX94892 | Canola | nucleus, plastid | 18.28 | 8.22 |
| CDX92957 | Canola | nucleus, plastid | 17.74 | 8.14 |
Protein Annotations
| EnsemblPlants:CDX92907 | EnsemblPlantsGene:GSBRNA2T00154756001 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| PANTHER:PTHR12446 | PANTHER:PTHR12446:SF14 | PFAM:PF03638 | PFscan:PS51634 | ProteinID:CDX92907 | ProteinID:CDX92907.1 |
| SEG:seg | SMART:SM01114 | UniParc:UPI0004EDF249 | MapMan:15.5.9 | : | : |
Description
BnaC07g41650D
Coordinates
chrLK031873:+:1452605..1455092
Molecular Weight (calculated)
60717.3 Da
IEP (calculated)
8.066
GRAVY (calculated)
-0.745
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKRRGRRDA VEDEEEEEEE QNPNSEITLR KPRSMGNAGG GGKLPPKNDG GFGVPARDPA TQLDLTGGSD QHSLSKPAPT VVSPAAVTSS VPSPVTVTTS
101: RLHPVATSQS QILNAPVRLP KQESPKSRPR PIVDGTPQKK KHCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFNNVDNEP SRRDAVEATL ERNPNAFRPK
201: IASSPHGVRD KREEMVLLGK HNKGCNCKKS GCLKKYCECF QANILCSENC KCLDCKNFDG SEERRALFHG ELANNMAYLQ QAANAAITGA VGSSGFAPYP
301: APKRRKGGQD ISFNQATTDT SPATGPSKFV YRSLLADVIQ PQDVKALCSV LVAVAGEAAK ALTDKRNDNR VEDQTETSLA SSAQENSQGD VEMAEPDGNQ
401: ADKSRRKPLS PSTLALMCDD EQDTIFMVAA SEPNGSVDPS WCRTNSQGQS QDYAELERVV LTKLRDCLSR LISYAELKES KRSYLARRHI QSPPSATETV
501: KMENGIQQAP PIVNGATTQP TVNKPQLLQP MQTTTNTSST HHPHKPPALP EKKDPLNQ
101: RLHPVATSQS QILNAPVRLP KQESPKSRPR PIVDGTPQKK KHCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFNNVDNEP SRRDAVEATL ERNPNAFRPK
201: IASSPHGVRD KREEMVLLGK HNKGCNCKKS GCLKKYCECF QANILCSENC KCLDCKNFDG SEERRALFHG ELANNMAYLQ QAANAAITGA VGSSGFAPYP
301: APKRRKGGQD ISFNQATTDT SPATGPSKFV YRSLLADVIQ PQDVKALCSV LVAVAGEAAK ALTDKRNDNR VEDQTETSLA SSAQENSQGD VEMAEPDGNQ
401: ADKSRRKPLS PSTLALMCDD EQDTIFMVAA SEPNGSVDPS WCRTNSQGQS QDYAELERVV LTKLRDCLSR LISYAELKES KRSYLARRHI QSPPSATETV
501: KMENGIQQAP PIVNGATTQP TVNKPQLLQP MQTTTNTSST HHPHKPPALP EKKDPLNQ
001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
Arabidopsis Description
TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.