Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71540 | Canola | nucleus, plastid | 35.32 | 80.38 |
| Bra011075.1-P | Field mustard | nucleus | 70.32 | 80.3 |
| CDY35239 | Canola | nucleus | 76.78 | 79.42 |
| CDY67603 | Canola | cytosol | 37.31 | 78.4 |
| CDX97461 | Canola | nucleus | 71.14 | 75.8 |
| Bra010348.1-P | Field mustard | nucleus | 69.49 | 73.0 |
| CDY66476 | Canola | nucleus | 69.32 | 72.95 |
| CDX92907 | Canola | nucleus | 65.67 | 70.97 |
| Bra024171.1-P | Field mustard | nucleus | 64.18 | 70.11 |
| AT2G20110.2 | Thale cress | nucleus | 57.71 | 60.21 |
| VIT_11s0016g03680.t01 | Wine grape | nucleus, plastid | 50.91 | 58.59 |
| KRH39300 | Soybean | nucleus | 52.24 | 56.35 |
| KRH48373 | Soybean | nucleus | 51.91 | 55.69 |
| PGSC0003DMT400000824 | Potato | plastid | 44.94 | 55.53 |
| KRH41552 | Soybean | nucleus | 50.41 | 55.17 |
| KRH60264 | Soybean | nucleus | 51.24 | 55.08 |
| Solyc12g007180.1.1 | Tomato | nucleus | 44.11 | 53.41 |
| GSMUA_Achr9P06330_001 | Banana | cytosol | 40.3 | 48.02 |
| GSMUA_Achr2P09150_001 | Banana | cytosol | 41.29 | 47.7 |
| GSMUA_Achr6P26760_001 | Banana | nucleus | 41.29 | 44.7 |
| Os01t0761100-01 | Rice | cytosol, nucleus, plastid | 43.78 | 42.65 |
| GSMUA_Achr3P31550_001 | Banana | nucleus | 40.46 | 41.71 |
| Zm00001d012688_P001 | Maize | nucleus | 40.8 | 40.07 |
| KXG33424 | Sorghum | nucleus | 40.63 | 39.97 |
| HORVU3Hr1G073470.1 | Barley | cytosol, nucleus, plastid | 40.13 | 39.54 |
| Zm00001d043378_P001 | Maize | nucleus | 39.8 | 39.28 |
| TraesCS3A01G304800.1 | Wheat | plastid | 39.97 | 39.19 |
| TraesCS3D01G297000.1 | Wheat | plastid | 39.3 | 38.54 |
| TraesCS3B01G331700.1 | Wheat | plastid | 39.14 | 38.37 |
| AT5G25790.2 | Thale cress | nucleus | 30.18 | 36.11 |
| CDY06853 | Canola | cytosol, nucleus, plastid | 76.45 | 32.74 |
| AT3G16160.1 | Thale cress | nucleus | 19.57 | 32.07 |
| AT4G14770.1 | Thale cress | nucleus | 17.58 | 15.73 |
| AT3G22760.1 | Thale cress | nucleus | 15.59 | 15.44 |
| AT3G22780.1 | Thale cress | nucleus | 16.92 | 14.68 |
| AT3G04850.1 | Thale cress | cytosol | 13.43 | 12.68 |
Protein Annotations
| MapMan:15.5.9 | EntrezGene:829021 | ProteinID:AEE85571.1 | EMBL:AK118658 | ArrayExpress:AT4G29000 | EnsemblPlantsGene:AT4G29000 |
| RefSeq:AT4G29000 | TAIR:AT4G29000 | RefSeq:AT4G29000-TAIR-G | EnsemblPlants:AT4G29000.1 | TAIR:AT4G29000.1 | Unigene:At.48915 |
| EMBL:BT005931 | ProteinID:CAB43914.1 | ProteinID:CAB79658.1 | InterPro:CRC | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR005172 | InterPro:Lin-54_fam | RefSeq:NP_194629.1 | PFAM:PF03638 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51634 | PANTHER:PTHR12446 | PANTHER:PTHR12446:SF14 | UniProt:Q9SZD1 | SMART:SM01114 |
| InterPro:Tesmin/TSO1-like_CXC | UniParc:UPI0000060DB8 | SEG:seg | : | : | : |
Description
TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
Coordinates
chr4:+:14293513..14297066
Molecular Weight (calculated)
64639.1 Da
IEP (calculated)
7.943
GRAVY (calculated)
-0.607
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.