Factsheet for Solyc12g007180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000824	Potato	plastid	83.53	85.25
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	63.45	60.31
CDY71540	Canola	nucleus, plastid	30.32	56.98
CDY67603	Canola	cytosol	32.53	56.45
KRH39300	Soybean	nucleus	63.05	56.17
KRH48373	Soybean	nucleus	62.85	55.69
KRH41552	Soybean	nucleus	60.84	54.99
KRH60264	Soybean	nucleus	61.85	54.9
Solyc07g020710.2.1	Tomato	nucleus	62.65	54.74
CDY05722	Canola	nucleus	48.19	48.48
Bra041042.1-P	Field mustard	nucleus	48.59	48.11
CDY31991	Canola	nucleus	48.59	47.83
GSMUA_Achr9P06330_001	Banana	cytosol	48.59	47.83
GSMUA_Achr2P09150_001	Banana	cytosol	46.99	44.83
AT2G20110.2	Thale cress	nucleus	51.2	44.12
AT4G29000.1	Thale cress	nucleus	53.41	44.11
CDY35239	Canola	nucleus	51.61	44.08
CDX97461	Canola	nucleus	49.6	43.64
CDX92907	Canola	nucleus	48.19	43.01
Bra011075.1-P	Field mustard	nucleus	45.58	42.99
CDY66476	Canola	nucleus	49.4	42.93
GSMUA_Achr6P26760_001	Banana	nucleus	47.79	42.73
Bra010348.1-P	Field mustard	nucleus	49.2	42.68
Bra024171.1-P	Field mustard	nucleus	46.99	42.39
Os01t0761100-01	Rice	cytosol, nucleus, plastid	48.39	38.93
GSMUA_Achr3P31550_001	Banana	nucleus	45.18	38.46
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	46.79	38.07
TraesCS3A01G304800.1	Wheat	plastid	46.79	37.89
TraesCS3B01G331700.1	Wheat	plastid	46.79	37.89
TraesCS3D01G297000.1	Wheat	plastid	46.59	37.72
Zm00001d012688_P001	Maize	nucleus	45.98	37.3
KXG33424	Sorghum	nucleus	45.38	36.87
Zm00001d043378_P001	Maize	nucleus	44.18	36.01
CDY06853	Canola	cytosol, nucleus, plastid	52.01	18.39
Solyc09g082500.2.1	Tomato	nucleus	19.88	11.94
Solyc08g067150.2.1	Tomato	nucleus	17.87	9.01

Protein Annotations

EnsemblPlants:Solyc12g007180.1.1	EnsemblPlantsGene:Solyc12g007180.1	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	SEG:seg	SMART:SM01114
UniParc:UPI00027693EC	UniProt:K4DBQ5	MapMan:15.5.9	:	:	:

Description

No Description!

Coordinates

chr12:-:1616773..1625594

Molecular Weight (calculated)

54521.6 Da

IEP (calculated)

7.328

GRAVY (calculated)

-0.527

Length

498 amino acids

Sequence
(BLAST)

001: MSVFSCIPVE TGICEWPRGK KMFGLPFCSF SFDPVWLSVF IFWLICEAIH DFRDDNHDPL LATLKPESPR ARPRQSASEV KDGTPKKQKQ CNCKHSRCLK
101: LYCECFASGV YCDGCNCNNC HNNVENEPAR REAVEATLER NPHAFRPKIA SSPHGARDNK EEAGDGLVLA KHNKGCHCKK SGCLKKYCEC FQANILCSEN
201: CKCMDCKNFE GSEERQALFH GDHANNMAYL QQAANAAITG AIGSSGYGSP PVNKKRKSQE LFFGSTIKDP IHRHGQLQQG NHIKSSVLPS LSSSPGPCVG
301: NAATVGPSKF TYRSLLEDLI QPQDLKELCS VLVVYSGEAA KMLADEKDAS KKQAEGQTQA SLASSTQEQV QNQKDSGSEK DMLDCSLSGD QGEKISMKES
401: SLDGADVSKR RPMSPGTLAL MCDESDSMFA AAITSPDDLA TLGCNTSSQL PHGQGMTETY AEQERIVLTK FRDCLNRLVT LGEIKGRGKK MFFNGAGY

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.