Factsheet for VIT_11s0016g03680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000824	Potato	plastid	60.88	65.37
KRH39300	Soybean	nucleus	68.89	64.58
KRH48373	Soybean	nucleus	68.89	64.23
Solyc12g007180.1.1	Tomato	nucleus	60.31	63.45
KRH60264	Soybean	nucleus	67.37	62.92
KRH41552	Soybean	nucleus	65.46	62.25
CDY71540	Canola	nucleus, plastid	29.2	57.74
CDY67603	Canola	cytosol	31.11	56.79
CDY05722	Canola	nucleus	51.91	54.95
GSMUA_Achr9P06330_001	Banana	cytosol	52.67	54.55
Bra041042.1-P	Field mustard	nucleus	52.29	54.47
CDY31991	Canola	nucleus	52.29	54.15
GSMUA_Achr2P09150_001	Banana	cytosol	52.29	52.49
CDY35239	Canola	nucleus	56.87	51.11
AT4G29000.1	Thale cress	nucleus	58.59	50.91
CDX97461	Canola	nucleus	54.58	50.53
Bra011075.1-P	Field mustard	nucleus	50.38	50.0
CDY66476	Canola	nucleus	53.44	48.87
Bra010348.1-P	Field mustard	nucleus	53.44	48.78
AT2G20110.2	Thale cress	nucleus	53.63	48.62
GSMUA_Achr6P26760_001	Banana	nucleus	51.34	48.29
CDX92907	Canola	nucleus	51.34	48.21
Bra024171.1-P	Field mustard	nucleus	50.76	48.19
GSMUA_Achr3P31550_001	Banana	nucleus	48.85	43.76
VIT_04s0008g03670.t01	Wine grape	plastid	55.34	42.9
Os01t0761100-01	Rice	cytosol, nucleus, plastid	48.09	40.71
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	45.8	39.22
Zm00001d012688_P001	Maize	nucleus	45.61	38.93
TraesCS3A01G304800.1	Wheat	plastid	45.61	38.86
TraesCS3B01G331700.1	Wheat	plastid	45.61	38.86
TraesCS3D01G297000.1	Wheat	plastid	45.42	38.7
KXG33424	Sorghum	nucleus	45.23	38.66
Zm00001d043378_P001	Maize	nucleus	43.89	37.64
VIT_09s0002g06020.t01	Wine grape	nucleus	15.27	24.54
CDY06853	Canola	cytosol, nucleus, plastid	56.68	21.09
VIT_04s0008g05130.t01	Wine grape	extracellular, golgi	16.22	19.45
VIT_05s0020g03880.t01	Wine grape	nucleus	19.66	13.5
VIT_14s0030g01800.t01	Wine grape	nucleus	18.32	11.91

Protein Annotations

EntrezGene:100249023	wikigene:100249023	MapMan:15.5.9	ProteinID:CBI28048	ProteinID:CBI28048.3	InterPro:CRC
UniProt:D7TBL3	EMBL:FN595756	InterPro:IPR005172	EntrezGene:LOC100249023	wikigene:LOC100249023	InterPro:Lin-54_fam
PFAM:PF03638	PFscan:PS51634	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	SMART:SM01114	TIGR:TC52474
InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0001BE30EB	ArrayExpress:VIT_11s0016g03680	EnsemblPlantsGene:VIT_11s0016g03680	EnsemblPlants:VIT_11s0016g03680.t01	unigene:Vvi.14728
RefSeq:XP_002280793	RefSeq:XP_002280793.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:3008220..3017923

Molecular Weight (calculated)

56666.4 Da

IEP (calculated)

7.835

GRAVY (calculated)

-0.655

Length

524 amino acids

Sequence
(BLAST)

001: MPVPPQTTHP SVRVVKPESP RSRPRPNIDV KDGTPKKQKQ CNCKHSRCLK LYCECFASGI YCDGCNCVNC HNNVENEAAR REAVEVTLER NPNAFRPKIA
101: SSPHGARDSR EESGEALVLG KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE GSEERQALFH GDHANSMAYI QQAANAAITG AIGSSGFGSP
201: PVSKKRKGQE LFYGPTSKDP SLHRLAQFQQ ASLTKASVTT SSLSSTPVSR VPNSAASGTS KFTYRSLLAD IIQPQDLKEL CSVLVVVSEE AARTFADKRN
301: LVEKPAEEQV ETSRASSTQD RLQSQKESDI EKAVADDCSS RNQADKLGPD DSSSDGGDVP KGRPMSPGTL ALMCDEQDTM FMAAASPNVL MGHSCNTSSQ
401: LPYGQGITEA YAEQERIILT KFRDCLNRLI TFGEIKETKC SSLARTESGG QNEPFSNGPA NARTDTGNQQ VPVSNGVSKP PFPPATKMSQ TVTAAAASPN
501: NTLLSKPSTH TENGDINLKT EKEL

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.