Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g03680.t01 | Wine grape | nucleus, plastid | 42.9 | 55.34 |
| Solyc07g020710.2.1 | Tomato | nucleus | 38.61 | 45.79 |
| KRH62039 | Soybean | nucleus | 38.61 | 44.62 |
| KRH52709 | Soybean | nucleus | 37.72 | 43.74 |
| VIT_09s0002g06020.t01 | Wine grape | nucleus | 10.5 | 21.78 |
| VIT_04s0008g05130.t01 | Wine grape | extracellular, golgi | 11.69 | 18.08 |
| VIT_05s0020g03880.t01 | Wine grape | nucleus | 16.12 | 14.29 |
| VIT_14s0030g01800.t01 | Wine grape | nucleus | 14.64 | 12.28 |
Protein Annotations
| EntrezGene:100243881 | wikigene:100243881 | MapMan:15.5.9 | ProteinID:CBI20876 | ProteinID:CBI20876.3 | InterPro:CRC |
| UniProt:D7SUC7 | EMBL:FN595231 | InterPro:IPR005172 | EntrezGene:LOC100243881 | wikigene:LOC100243881 | InterPro:Lin-54_fam |
| PFAM:PF03638 | PFscan:PS51634 | PANTHER:PTHR12446 | PANTHER:PTHR12446:SF14 | SMART:SM01114 | InterPro:Tesmin/TSO1-like_CXC |
| UniParc:UPI0001BE184F | ArrayExpress:VIT_04s0008g03670 | EnsemblPlantsGene:VIT_04s0008g03670 | EnsemblPlants:VIT_04s0008g03670.t01 | RefSeq:XP_002281512 | RefSeq:XP_002281512.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:3022802..3030630
Molecular Weight (calculated)
73862.9 Da
IEP (calculated)
8.757
GRAVY (calculated)
-0.670
Length
676 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAVRSSSSS SHRQKSQKFN FKSSRGRRGE KKPRLYVSPF VSDPVQVAGV DSDHPETASD ELFQIPSRAA ARGTQRHRFF ILRANEASDF PAKRQLDFTA
101: MCRASANVIL PEHPQLPLQT QPQRSQSQSQ WQLQSQSPPQ LLPPQPRPQL VPVVPRITNP SRPTLQAVKQ ESPRSLPRSN SEVKDGTPKK KKHCNCKNSR
201: CLKLYCECFA SGVYCNNCHC SNCQNNVVNE AARKEAVGST LDRNPNAFRP KIANSPHGSH DGGEEAGKVP LVGKHNKGCH CKKSGCLKKY CECFQANILC
301: SENCKCMDCK NFEGSEERRA LFHDNGNYMA YIQQAANAAI SGAIGSSGYG TAVASKKRKQ QVSFCTTANN QSNHRNTQFQ QDNHLRASAV SPSPSISVTH
401: TNNAAVLGSS KFTYRSPLAD ILQLQDVKDL CSLLVVVSQE AGKTLTEAER DHIETSIISS TQEREHLQTD DVQKPLPDAC LSENQVERVQ TDELDQADVQ
501: NGRLMSPGTL ALMCDEQDSI FMVRGSPDGV VGSSQIPTVK SSHGQACTEV YVEQERLVLT KFWDFLNRLI TCGSIKETMC SPLAKSHTGN QQEPLEDDAT
601: KVGTGKGNHK EPNGNSIVKP SFAATTQMSQ TIAAAKGNGI AKQKPPFPAT THISQTIPAV HGNGTAKPPP STNQMS
101: MCRASANVIL PEHPQLPLQT QPQRSQSQSQ WQLQSQSPPQ LLPPQPRPQL VPVVPRITNP SRPTLQAVKQ ESPRSLPRSN SEVKDGTPKK KKHCNCKNSR
201: CLKLYCECFA SGVYCNNCHC SNCQNNVVNE AARKEAVGST LDRNPNAFRP KIANSPHGSH DGGEEAGKVP LVGKHNKGCH CKKSGCLKKY CECFQANILC
301: SENCKCMDCK NFEGSEERRA LFHDNGNYMA YIQQAANAAI SGAIGSSGYG TAVASKKRKQ QVSFCTTANN QSNHRNTQFQ QDNHLRASAV SPSPSISVTH
401: TNNAAVLGSS KFTYRSPLAD ILQLQDVKDL CSLLVVVSQE AGKTLTEAER DHIETSIISS TQEREHLQTD DVQKPLPDAC LSENQVERVQ TDELDQADVQ
501: NGRLMSPGTL ALMCDEQDSI FMVRGSPDGV VGSSQIPTVK SSHGQACTEV YVEQERLVLT KFWDFLNRLI TCGSIKETMC SPLAKSHTGN QQEPLEDDAT
601: KVGTGKGNHK EPNGNSIVKP SFAATTQMSQ TIAAAKGNGI AKQKPPFPAT THISQTIPAV HGNGTAKPPP STNQMS
001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
Arabidopsis Description
TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.