Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g007180.1.1 | Tomato | nucleus | 54.74 | 62.65 |
| VIT_04s0008g03670.t01 | Wine grape | plastid | 45.79 | 38.61 |
| KRH62039 | Soybean | nucleus | 39.12 | 38.12 |
| KRH52709 | Soybean | nucleus | 38.6 | 37.74 |
| Solyc09g082500.2.1 | Tomato | nucleus | 18.07 | 12.42 |
| Solyc08g067150.2.1 | Tomato | nucleus | 15.26 | 8.81 |
Protein Annotations
| EnsemblPlants:Solyc07g020710.2.1 | EnsemblPlantsGene:Solyc07g020710.2 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| ncoils:Coil | PANTHER:PTHR12446 | PANTHER:PTHR12446:SF14 | PFAM:PF03638 | PFscan:PS51634 | SEG:seg |
| SMART:SM01114 | UniParc:UPI000276C5C0 | UniProt:K4CCT3 | MapMan:15.5.9 | : | : |
Description
No Description!
Coordinates
chr7:+:13283922..13300852
Molecular Weight (calculated)
61988.5 Da
IEP (calculated)
7.545
GRAVY (calculated)
-0.609
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKIEEGHFP PKKAESELAS VQVETDNPAK KLARQLDFTG GVPGQALTVS LQEHANQIIQ PEVIKSSQLT VSMKSTQVIS PQPQLQQHIL LMPMQQAPVL
101: PPQPLIRPLS MQSSSEAKDG TPKKPKQCNC KHSRCLKLYC ECFASGIFCD GCNCANCHNN VENEASREEA VEATLERNPN AFRPKIASSP HGTREEREEA
201: GDGLVLPKHN KGCHCKKSGC LKKYCECFQA NILCSENCRC MDCKNFEGNE ERQAHFHGYH ANNMAYLQQT ANVAITDAIG SSGYGSPPVN KNRKPQELFS
301: GSMIKDPVHR LGQFQQENQI KASVPPSLLS SIPSTRVSNA AALGPPKPTY RSLLADIIQN HDIKELCSVL IVYAQEAAKI LSDEKDASLK QAKHHRKASY
401: PSSGVGKVVP DDCSTGIQAE SIRGDESRLD GADVSAERPI SPGTLALMCD EQDTTFTAAA APPNDLTSLS NNTSSQPPHG QGRAEIYPEL ERIVLAQTRD
501: CLKKLITLGE IKEKKCSLMV RDTDSGRQNN VSSNGVVNTV PPPPPPQQKV DSGTTAANTT RPKVHPPDGK
101: PPQPLIRPLS MQSSSEAKDG TPKKPKQCNC KHSRCLKLYC ECFASGIFCD GCNCANCHNN VENEASREEA VEATLERNPN AFRPKIASSP HGTREEREEA
201: GDGLVLPKHN KGCHCKKSGC LKKYCECFQA NILCSENCRC MDCKNFEGNE ERQAHFHGYH ANNMAYLQQT ANVAITDAIG SSGYGSPPVN KNRKPQELFS
301: GSMIKDPVHR LGQFQQENQI KASVPPSLLS SIPSTRVSNA AALGPPKPTY RSLLADIIQN HDIKELCSVL IVYAQEAAKI LSDEKDASLK QAKHHRKASY
401: PSSGVGKVVP DDCSTGIQAE SIRGDESRLD GADVSAERPI SPGTLALMCD EQDTTFTAAA APPNDLTSLS NNTSSQPPHG QGRAEIYPEL ERIVLAQTRD
501: CLKKLITLGE IKEKKCSLMV RDTDSGRQNN VSSNGVVNTV PPPPPPQQKV DSGTTAANTT RPKVHPPDGK
001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
Arabidopsis Description
TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.