Factsheet for VIT_14s0030g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0638300-01	Rice	cytosol	7.57	53.98
VIT_05s0020g03880.t01	Wine grape	nucleus	50.37	53.21
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	17.87	50.35
KRH77830	Soybean	nucleus	44.66	46.51
KRH27657	Soybean	nucleus	44.17	45.99
CDY54822	Canola	cytosol, plastid	31.14	45.72
CDY67857	Canola	nucleus, plastid	34.12	45.53
Bra023810.1-P	Field mustard	nucleus, plastid	33.25	45.27
CDY64240	Canola	cytosol, plastid	33.0	44.63
CDY10668	Canola	nucleus, plastid	31.76	44.6
Bra036900.1-P	Field mustard	nucleus, plastid	35.48	44.34
KRH35487	Soybean	nucleus	41.69	44.21
CDY29770	Canola	nucleus, plastid	35.24	43.89
CDY42785	Canola	nucleus, plastid	35.73	43.84
KRG91344	Soybean	nucleus	42.06	43.8
Solyc09g082500.2.1	Tomato	nucleus	44.42	43.18
PGSC0003DMT400082098	Potato	nucleus	44.17	43.1
AT4G14770.1	Thale cress	nucleus	35.86	42.88
Bra033920.1-P	Field mustard	plastid	30.4	42.61
AT3G22780.1	Thale cress	nucleus	36.35	42.16
AT3G22760.1	Thale cress	nucleus	31.27	41.38
CDY54821	Canola	nucleus	34.74	41.24
GSMUA_Achr9P10600_001	Banana	nucleus	37.59	41.06
GSMUA_Achr8P20460_001	Banana	nucleus	40.2	40.25
CDY64242	Canola	nucleus	13.15	40.15
GSMUA_Achr9P25670_001	Banana	nucleus	39.7	38.6
CDY10669	Canola	nucleus	35.11	37.83
Bra033919.1-P	Field mustard	nucleus	34.86	37.57
HORVU5Hr1G012950.1	Barley	nucleus	32.63	34.33
Os12t0605500-01	Rice	nucleus	32.13	34.08
TraesCS5D01G065300.1	Wheat	nucleus	32.26	33.99
TraesCS5A01G053800.1	Wheat	nucleus	32.26	33.99
TraesCS5B01G062400.1	Wheat	nucleus	32.13	33.86
OQU88523	Sorghum	nucleus	32.51	33.76
Os07t0176200-01	Rice	nucleus	32.75	33.76
TraesCS4D01G026100.1	Wheat	nucleus	31.89	32.66
EES17353	Sorghum	nucleus	30.65	32.2
TraesCS4B01G028500.1	Wheat	nucleus	31.51	32.19
Zm00001d018930_P003	Maize	nucleus	31.76	30.99
VIT_09s0002g06020.t01	Wine grape	nucleus	12.41	30.67
TraesCS4A01G284600.2	Wheat	nucleus	31.76	30.59
EER93767	Sorghum	nucleus	27.67	29.85
Zm00001d031009_P004	Maize	golgi, plasma membrane	30.52	29.57
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	30.4	29.31
VIT_04s0008g05130.t01	Wine grape	extracellular, golgi	15.63	28.83
Zm00001d033274_P005	Maize	nucleus	25.93	28.47
HORVU4Hr1G004280.15	Barley	nucleus, plastid	31.39	27.41
Bra001884.1-P	Field mustard	nucleus, plastid	34.86	22.98
CDX94892	Canola	nucleus, plastid	35.24	22.88
CDX92957	Canola	nucleus, plastid	34.37	22.78
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	11.91	18.32
VIT_04s0008g03670.t01	Wine grape	plastid	12.28	14.64

Protein Annotations

EntrezGene:100265943	MapMan:15.5.9	EMBL:AM486629	ProteinID:CAN68781	ProteinID:CAN68781.1	ProteinID:CCB58094
ProteinID:CCB58094.1	InterPro:CRC	UniProt:F6HTT3	EMBL:FN596249	InterPro:IPR005172	InterPro:Lin-54_fam
PFAM:PF03638	PFscan:PS51634	PANTHER:PTHR12446	PANTHER:PTHR12446:SF46	SMART:SM01114	TIGR:TC70735
InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0001984A25	ArrayExpress:VIT_14s0030g01800	EnsemblPlantsGene:VIT_14s0030g01800	EnsemblPlants:VIT_14s0030g01800.t01	unigene:Vvi.15453
RefSeq:XP_010659899.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:6670924..6677269

Molecular Weight (calculated)

89091.0 Da

IEP (calculated)

5.775

GRAVY (calculated)

-0.748

Length

806 amino acids

Sequence
(BLAST)

001: MDTPEKYQIA TPISKYEDSP VFNYINSLSP IKPVKSIPTD QTFSSLSFAS PSSVFTSPHI NPQRESRFLR RQQFTDPSKP EFSRRDNDEN TSEGVLDAVH
101: QLDYLDPGSS DTGITIDPSN KDPKSDAGLP QSLKYDCTSP EDNRIPHNDI ETETMPEVAI RPASHVHFVQ GVSKERRQSF EIETELRGIC QIGESKEAAG
201: CDWGKLISDD TDQLIFDSSI SKEHSEVQDH KTVDPGTYSF IATVLQLPHD EIDDLQKSQS MGSVDSYEQC ETEETVTKSR DVGEIKETDQ TPAVPSSTLL
301: DKLVVSDSRA EVDDKKGKKC MQSSCKLGSQ QQLSIRRRCL LYEMTGAHKK KLIYNSDSGS SASSQSDGKV SSDEKQFMPF KPGNIHPSSM LAGIGLHLNA
401: LATTAEDGNK VVKHEPLASE RKPISMSRSI PSLNSMSLGQ TPLNKSLTPD LLERDLVRFD SEVQATEDAS QTSEFGVSEE FNHGSPKRKR RRSEQAAENE
501: ACKRCNCKKS KCLKLYCECF AAGLYCVEPC SCQDCFNKPV HEDTVLQTRK QIESRNPLAF APKVIRSSDY VPEFGDESNK TPASARHKRG CNCKKSSCLK
601: KYCECFQGGV GCSISCRCEG CKNTFGRKDG TEEAELDEEE TEETCDKNSL DTSSQYDVVL RGEEEHSDLV PPVTPSSEIS RPLVQLPFTL GGGKPPQSSL
701: LSVGSSSQMY TSQKFGPSGF ICRLPKFEKH LEMIPEDETP EILQGTLAGG VKSTSPNSKR VSPPHHKIGS TRAWRSGRKL ILRSIPSFPS LNPCQESSDR
801: SPGKTQ

Best Arabidopsis Sequence Match ( AT3G22780.1 )
(BLAST)

001: MDKSQKNPTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF TSPHVISHRE SRFFRCHNSV DRSKHLESLD GSAVKGEVVV
101: PLVEDLNKEA SLEDEEETSV ETSSELPQIM KFDSQTSEHS DSPCTEDVVI EASSDPPRGD NGSSSEDVTM GLQNMLVVRE GNDTPGCGRL ISDATELLVF
201: RSPNDSEAFR CLVDKISSSE RRFCAGVKST KRPDINKDIP ANGSSNENQP LAVLPTNESV FNLHRGGMRR RCLDFEMPGK RKKDIVDDQQ SVCDNNVAGE
301: SSSSCVVPGI GLHLNAVAMS AKDSNISVIH GYSISGEIQK SFSGSTTPIQ SQDTVQETSD QAENEPVEEV PKALVFPELN LGSLKKKMRK SEQAGEGESC
401: KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIRNADSIM EASDDASKTP ASARHKRGCN CKKSNCMKKY
501: CECYQGGVGC SMNCRCEGCT NVFGRKDGSL LVIMESKLEE NQETYEKRIA KIQHNVEVSK EVEQNPSSDQ PSTPLPPYRH LVVHQPFLSK NRLPPTQFFL
601: GTGSSSFRKP NSDLAQSQNE KKPLETVTED KTEIMPEILL NSPIANIKAI SPNSKRVSPP QPGSSESGSI LRRRGNGRKL ILRSIPAFPS LNPNQ

Arabidopsis Description

TSO1CRC domain-containing protein TSO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.