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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 2
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra036900.1-P Field mustard nucleus, plastid 97.37 97.67
CDY42785 Canola nucleus, plastid 95.05 93.61
AT4G14770.1 Thale cress nucleus 78.83 75.67
CDY67857 Canola nucleus, plastid 55.33 59.27
CDY34235 Canola endoplasmic reticulum, extracellular, vacuole 25.97 58.74
Os03t0638300-01 Rice cytosol 10.05 57.52
CDY64240 Canola cytosol, plastid 52.4 56.88
CDY54822 Canola cytosol, plastid 48.22 56.83
CDY10668 Canola nucleus, plastid 49.92 56.27
CDY54821 Canola nucleus 53.32 50.81
CDY64242 Canola nucleus 18.7 45.83
CDY10669 Canola nucleus 52.24 45.19
KRH35487 Soybean nucleus 47.45 40.39
KRG91344 Soybean nucleus 47.91 40.05
KRH77830 Soybean nucleus 47.91 40.05
KRH27657 Soybean nucleus 47.45 39.66
Solyc09g082500.2.1 Tomato nucleus 47.91 37.39
PGSC0003DMT400082098 Potato nucleus 47.6 37.29
VIT_14s0030g01800.t01 Wine grape nucleus 43.89 35.24
GSMUA_Achr9P10600_001 Banana nucleus 38.18 33.47
GSMUA_Achr8P20460_001 Banana nucleus 40.65 32.67
CDY44573 Canola cytosol 6.96 31.69
CDX79489 Canola cytosol 15.77 31.58
OQU88523 Sorghum nucleus 37.4 31.19
TraesCS4D01G026100.1 Wheat nucleus 37.71 31.0
TraesCS5A01G053800.1 Wheat nucleus 36.48 30.85
TraesCS5D01G065300.1 Wheat nucleus 36.48 30.85
Os07t0176200-01 Rice nucleus 37.09 30.69
HORVU5Hr1G012950.1 Barley nucleus 36.32 30.68
Os12t0605500-01 Rice nucleus 36.01 30.66
CDX74164 Canola nucleus 24.73 30.65
GSMUA_Achr9P25670_001 Banana nucleus 39.1 30.52
TraesCS5B01G062400.1 Wheat nucleus 36.01 30.46
TraesCS4B01G028500.1 Wheat nucleus 36.79 30.16
EES17353 Sorghum nucleus 34.93 29.47
CDY71540 Canola nucleus, plastid 12.06 29.43
CDY40681 Canola mitochondrion, plasma membrane, plastid, vacuole 24.57 29.28
TraesCS4A01G284600.2 Wheat nucleus 37.87 29.27
Zm00001d018930_P003 Maize nucleus 36.17 28.33
CDX92957 Canola nucleus, plastid 52.24 27.8
CDX94892 Canola nucleus, plastid 53.01 27.64
Zm00001d041445_P007 Maize golgi, nucleus, plasma membrane 35.7 27.63
CDY67603 Canola cytosol 12.21 27.53
EER93767 Sorghum nucleus 31.38 27.18
Zm00001d031009_P004 Maize golgi, plasma membrane 34.31 26.68
HORVU4Hr1G004280.15 Barley nucleus, plastid 37.25 26.11
Zm00001d033274_P005 Maize nucleus 28.59 25.2
CDY19795 Canola nucleus 14.84 21.1
CDY20184 Canola cytosol 10.82 20.59
CDY28377 Canola nucleus 10.36 20.43
CDY05722 Canola nucleus 15.46 20.2
CDY31991 Canola nucleus 15.61 19.96
CDY05340 Canola nucleus 14.53 19.67
CDX88196 Canola nucleus 14.99 19.02
CDY65712 Canola nucleus 13.45 19.0
CDX80536 Canola nucleus 14.68 18.3
CDX97461 Canola nucleus 15.61 17.84
CDY66476 Canola nucleus 15.77 17.8
CDX92907 Canola nucleus 14.68 17.03
CDY35239 Canola nucleus 15.15 16.81
CDY06853 Canola cytosol, nucleus, plastid 15.15 6.96
Protein Annotations
EnsemblPlants:CDY29770EnsemblPlantsGene:GSBRNA2T00043627001InterPro:CRCInterPro:IPR005172InterPro:Lin-54_famInterPro:Tesmin/TSO1-like_CXC
ncoils:CoilPANTHER:PTHR12446PANTHER:PTHR12446:SF21PFAM:PF03638PFscan:PS51634ProteinID:CDY29770
ProteinID:CDY29770.1SEG:segSMART:SM01114UniParc:UPI0004EDAEA6UniProt:A0A078GTH9MapMan:15.5.9
Description
BnaA01g18960DBnaA01g18960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTH9]
Coordinates
chrLK032243:-:405238..408650
Molecular Weight (calculated)
71232.3 Da
IEP (calculated)
5.454
GRAVY (calculated)
-0.719
Length
647 amino acids
Sequence
(BLAST)
001: MDTPQKSITQ IETPVSKSRF EDSPVFNYIN SLSPIRPVKS IPNPHQFSTL NFTSPPSVFT SPHLTSSHKE SRFFKTHHPS PDPTILVQES PDDSKSNEES
101: AAEADATTEF NIDASTEMEQ PQIVKYDVKE TNLDETTDLS LVPYASPPRE DNGEDAPGME MHDNVQGKNE TPDWDRLIAD SSEFLIFSSP NDSEAFRCLM
201: MQRASPSQAP SVMMPTMQPG SINEPESSNA SPYGAVSVLH RGIRRRCLDF EMPGNKQTSS ENNTAACGSS SRCVVPSIGL HLNALLMSTK DCKTNNTTHD
301: YSCSEKYQVG LQGSSSTLQE TLDQTETETR EDVTVEPTLE ELHLSSPKKK RQLEAGEGES CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPIH
401: EDTVLATRKQ IESRNPLAFA PKVIKSSDLV LETGDDASKT PASARHKRGC NCKKSNCLKK YCECFQGGVG CSINCRCEGC KNAFGRKDGS AIVDMEAEQE
501: EENETSGKNR RAKNQENTEV YLMRKEESSA LPATPMSVYR QQLVQLKNMM PPPQSVLGGG SSSSGMFNSQ YTRKPEMKSL ETVAEDGAEE MPEILSHSSI
601: DNINAVSPNG KRVSPPHMDS SSSGRRSGGR KLILQSIPTF PSLTPQH
Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)
001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH
Arabidopsis Description
TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.