CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54822	Canola	cytosol, plastid	88.68	92.71
Bra033920.1-P	Field mustard	plastid	92.86	92.7
CDY67857	Canola	nucleus, plastid	74.39	70.7
CDY64240	Canola	cytosol, plastid	71.95	69.3
AT3G22760.1	Thale cress	nucleus	63.94	60.26
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	27.87	55.94
Os03t0638300-01	Rice	cytosol	10.28	52.21
CDY29770	Canola	nucleus, plastid	56.27	49.92
CDY42785	Canola	nucleus, plastid	56.1	49.01
CDY54821	Canola	nucleus	51.74	43.74
CDY64242	Canola	nucleus	18.29	39.77
CDY10669	Canola	nucleus	51.22	39.3
KRH77830	Soybean	nucleus	49.83	36.95
KRH27657	Soybean	nucleus	48.78	36.18
KRG91344	Soybean	nucleus	46.86	34.75
KRH35487	Soybean	nucleus	45.99	34.74
PGSC0003DMT400082098	Potato	nucleus	48.08	33.41
Solyc09g082500.2.1	Tomato	nucleus	47.91	33.17
VIT_14s0030g01800.t01	Wine grape	nucleus	44.6	31.76
GSMUA_Achr9P10600_001	Banana	nucleus	40.42	31.44
CDX79489	Canola	cytosol	17.07	30.34
CDY44573	Canola	cytosol	7.49	30.28
GSMUA_Achr8P20460_001	Banana	nucleus	42.16	30.06
CDX74164	Canola	nucleus	26.13	28.74
GSMUA_Achr9P25670_001	Banana	nucleus	41.29	28.59
HORVU5Hr1G012950.1	Barley	nucleus	37.11	27.81
TraesCS5D01G065300.1	Wheat	nucleus	36.93	27.71
TraesCS5A01G053800.1	Wheat	nucleus	36.93	27.71
Os12t0605500-01	Rice	nucleus	36.59	27.63
TraesCS5B01G062400.1	Wheat	nucleus	36.76	27.58
EES17353	Sorghum	nucleus	36.76	27.51
OQU88523	Sorghum	nucleus	37.11	27.45
CDY71540	Canola	nucleus, plastid	12.54	27.17
TraesCS4D01G026100.1	Wheat	nucleus	36.93	26.94
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	25.44	26.89
Os07t0176200-01	Rice	nucleus	36.41	26.73
TraesCS4B01G028500.1	Wheat	nucleus	36.41	26.49
CDY67603	Canola	cytosol	13.07	26.13
TraesCS4A01G284600.2	Wheat	nucleus	37.11	25.45
Zm00001d018930_P003	Maize	nucleus	36.59	25.42
EER93767	Sorghum	nucleus	32.58	25.03
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	36.24	24.88
Zm00001d031009_P004	Maize	golgi, plasma membrane	35.37	24.4
Zm00001d033274_P005	Maize	nucleus	31.01	24.25
CDX92957	Canola	nucleus, plastid	50.35	23.77
CDX94892	Canola	nucleus, plastid	51.05	23.61
HORVU4Hr1G004280.15	Barley	nucleus, plastid	36.06	22.43
CDY19795	Canola	nucleus	16.03	20.22
CDY20184	Canola	cytosol	11.67	19.71
CDY28377	Canola	nucleus	11.15	19.51
CDY05340	Canola	nucleus	15.68	18.83
CDX88196	Canola	nucleus	16.72	18.82
CDY05722	Canola	nucleus	15.68	18.18
CDX80536	Canola	nucleus	16.38	18.11
CDY65712	Canola	nucleus	14.29	17.9
CDY31991	Canola	nucleus	15.68	17.79
CDX97461	Canola	nucleus	15.85	16.08
CDY66476	Canola	nucleus	15.68	15.71
CDY35239	Canola	nucleus	15.68	15.44
CDX92907	Canola	nucleus	14.63	15.05
CDY06853	Canola	cytosol, nucleus, plastid	15.68	6.39

Protein Annotations

EnsemblPlants:CDY10668	EnsemblPlantsGene:GSBRNA2T00048430001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY10668	ProteinID:CDY10668.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EE2127	UniProt:A0A078FF02	MapMan:15.5.9	:

Description

BnaA05g16940DBnaA05g16940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FF02]

Coordinates

chrLK032005:+:474297..476935

Molecular Weight (calculated)

62935.4 Da

IEP (calculated)

8.012

GRAVY (calculated)

-0.624

Length

574 amino acids

Sequence
(BLAST)

001: MDTPPKNVTQ IENPISKLKL ENSPVFNYIN SLSPIKPVRS LPIAQTFGSL SYSSPPSVFA SPHVSSHKGS RFKSDHNHVP ASVGEEEALH ETEPPQILQN
101: ECTTTTPPRG ETDLLKMCDG NVKQKSETPD WDAMISDSSD ILIFDSMNDS EASTCFLERP SDSKTRSLGV AKSTLEPVIN SNDDLRRGGR RRCLDFEQTS
201: VASSSRCVVP SIGLHFNAIA LSSKDNNAGN EYPLSGNTEL GLQGSITPVL NSQDNVRENE TREDAGQGVE ECPKSLALVE LNQSSPKKKR QFGQAGEGES
301: SCKRCNCKRS KCLKLYCECF AAGVYCIGPC SCVDCLNKPI HEDTVMATRK QIESRNPLAF APKVIRNSDS IMEVGDDAKS KTPASARHKR GCNCKKSNCL
401: KKYCECYQSG VGCSINCRCE GCKNAFGRKD VSAGSSFTSM DKENETSSRG RTEKQPSTPM PLRQPLAQLP ISSNNMLLTH QHLHGASGSS LHMSQSFRRQ
501: DMSLMSHSKI GTITEERAEN IENLIESPMT NMINAVSPNS KRVSLPMELS PWRRNGGRKL LLSIPTFPSL TPHH

Best Arabidopsis Sequence Match ( AT3G22760.1 )
(BLAST)

001: MDTPEKSETQ IGTPVSKLKV EDSPVFSYIC NLSPIKTIKP IPITCPLSSL NYASPPSVFT SPHAVSHKES RFRSQKDVSA SKEVGEEEAL VGSEPEQSYK
101: NDCNTPRVTN DVKDNGCGKD LQVMMDNVKK KSDTPDWETL IAATTELIYG SPRESEAFSC LLKKTSNSEA RLRGSITATS VAVTNTDVVN NESESVDALS
201: ILHRGVRRRC LDFEVKGNNQ QTLGESSSSC VVPSIGLHLN TIAMSSKDKN VANEYSFSGN IKVGVQSSLT PVLHSQHDIV RENESGKDSG QIIEVVPKSL
301: ASVDLTPISP KKKRRKSEQS GEGDSSCKRC NCKKSKCLKL YCECFAAGFY CIEPCSCINC FNKPIHKDVV LATRKQIESR NPLAFAPKVI RNSDSIIEVG
401: EDASKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSLFEQ DEENETSGTP GTKKTQQNVE LFKPAAPPST PIPFRQPLAQ
501: LPISSNNRLL PPQSHFHHGA IGSSSSGIYN IRKPDMSLLS HSRIETITED IDDMSENLIH SPITTLSPNS KRVSLSHLDS PESTPWRRNG GGRNLIRSFP
601: TFPSLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.