Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G028500.1 | Wheat | nucleus | 96.06 | 95.82 |
| TraesCS4A01G284600.2 | Wheat | nucleus | 97.59 | 91.76 |
| HORVU4Hr1G004280.15 | Barley | nucleus, plastid | 92.5 | 78.87 |
| Os07t0176200-01 | Rice | nucleus | 74.46 | 74.94 |
| OQU88523 | Sorghum | nucleus | 70.78 | 71.78 |
| Zm00001d018930_P003 | Maize | nucleus | 65.57 | 62.47 |
| CDY34235 | Canola | endoplasmic reticulum, extracellular, vacuole | 16.14 | 44.41 |
| GSMUA_Achr9P10600_001 | Banana | nucleus | 36.34 | 38.75 |
| AT4G14770.1 | Thale cress | nucleus | 32.91 | 38.43 |
| GSMUA_Achr8P20460_001 | Banana | nucleus | 38.75 | 37.89 |
| Bra036900.1-P | Field mustard | nucleus, plastid | 31.0 | 37.83 |
| CDY29770 | Canola | nucleus, plastid | 31.0 | 37.71 |
| CDY67857 | Canola | nucleus, plastid | 28.84 | 37.58 |
| CDY42785 | Canola | nucleus, plastid | 31.26 | 37.44 |
| AT3G22760.1 | Thale cress | nucleus | 28.59 | 36.95 |
| CDY10668 | Canola | nucleus, plastid | 26.94 | 36.93 |
| TraesCS5D01G065300.1 | Wheat | nucleus | 35.83 | 36.86 |
| Bra023810.1-P | Field mustard | nucleus, plastid | 27.7 | 36.82 |
| CDY64240 | Canola | cytosol, plastid | 27.83 | 36.74 |
| CDY54822 | Canola | cytosol, plastid | 25.41 | 36.43 |
| Bra033920.1-P | Field mustard | plastid | 26.43 | 36.17 |
| VIT_05s0020g03880.t01 | Wine grape | nucleus | 34.18 | 35.26 |
| KRH27657 | Soybean | nucleus | 33.93 | 34.5 |
| GSMUA_Achr9P25670_001 | Banana | nucleus | 36.09 | 34.26 |
| KRH77830 | Soybean | nucleus | 33.67 | 34.24 |
| CDY64242 | Canola | nucleus | 11.44 | 34.09 |
| CDY54821 | Canola | nucleus | 29.35 | 34.02 |
| AT3G22780.1 | Thale cress | nucleus | 29.99 | 33.96 |
| TraesCS1D01G393200.1 | Wheat | cytosol | 7.75 | 33.89 |
| KRH35487 | Soybean | nucleus | 31.64 | 32.76 |
| KRG91344 | Soybean | nucleus | 32.15 | 32.69 |
| VIT_14s0030g01800.t01 | Wine grape | nucleus | 32.66 | 31.89 |
| Solyc09g082500.2.1 | Tomato | nucleus | 33.42 | 31.73 |
| PGSC0003DMT400082098 | Potato | nucleus | 33.04 | 31.48 |
| CDY10669 | Canola | nucleus | 29.35 | 30.88 |
| Bra033919.1-P | Field mustard | nucleus | 29.35 | 30.88 |
| TraesCS1D01G329200.1 | Wheat | plastid | 14.1 | 29.68 |
| TraesCS5D01G065500.1 | Wheat | nucleus, plastid | 12.71 | 27.86 |
| TraesCS3D01G233200.1 | Wheat | nucleus | 8.26 | 26.75 |
| TraesCS2D01G563300.1 | Wheat | nucleus | 8.64 | 25.76 |
| CDX92957 | Canola | nucleus, plastid | 29.86 | 19.33 |
| CDX94892 | Canola | nucleus, plastid | 30.24 | 19.18 |
| Bra001884.1-P | Field mustard | nucleus, plastid | 29.35 | 18.89 |
| TraesCS7D01G338500.1 | Wheat | nucleus, plastid | 10.8 | 17.49 |
| TraesCS2D01G125000.1 | Wheat | plastid | 11.82 | 15.82 |
| TraesCS3D01G297000.1 | Wheat | plastid | 11.94 | 15.28 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G026100.1 | EnsemblPlantsGene:TraesCS4D01G026100 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| PANTHER:PTHR12446 | PANTHER:PTHR12446:SF43 | PFAM:PF03638 | PFscan:PS51634 | SEG:seg | SMART:SM01114 |
| MapMan:15.5.9 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:11364404..11369466
Molecular Weight (calculated)
85023.4 Da
IEP (calculated)
6.954
GRAVY (calculated)
-0.650
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPDRAAAP AAARAEDSPL FSFINSLSPI EPLKSAYSGN GLQAYHQSLN VTSVSSIFTS PHHNAHKESK LSKSSFADYT ENELCMEDGT DKNKSPTSST
101: AVRLFACTST ITRESHTMIT CSVNEGIVDP PKGPNDFPQP GRFDSGSPDH NTAPCHGVSV RSDLKQDKCP KLETVQTTNN TVEKRKCLFS SDMQLQDGCQ
201: PAKENNEVMG CEWEDLVSVT SGELLAFDSS MDQHHTGVQL AVNNAESCGY LLSKLAGGAD ISDRTHPATS SQAYYHEMVV GEDKTENGQL FPEDKKTILS
301: EEIQDNINEE NACIPLGCKV ETQQRGVRRR CLVFEAAGYS HRTVQKESVG DLSFSTCKGK SSAQNHRNPG KTPSPHVFRG IGLHLNALAL TSKDKMACQD
401: PLATALVPSL KTEQDVHGNL LSAGGNFVHS GSGLLDLQMD NDDCSVGGFL GNDHNSSQSS SPPKKRRKSD NGDDDSCKRC SCKKSKCLKL YCECFAAGVY
501: CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI RMSEAGQETQ EDPKNTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSNN CRCETCKNTF
601: GTRDVAVSAE NEEMKQEGDQ TESCEKEKEN DQQKANVHSE DHKLVELVVP ITPPLDVSSS LLKQPNFSNA KPPRPCKARS GSSSRSSKAS ETVQSRKISK
701: VGDSVFIEEM PDILREPSSP GIVKTCSPNG KRVSPPHNAL SISPNRKGGR KLILKSIPSF PSLAGDTNGG SAICSSDSAT ALALGPS
101: AVRLFACTST ITRESHTMIT CSVNEGIVDP PKGPNDFPQP GRFDSGSPDH NTAPCHGVSV RSDLKQDKCP KLETVQTTNN TVEKRKCLFS SDMQLQDGCQ
201: PAKENNEVMG CEWEDLVSVT SGELLAFDSS MDQHHTGVQL AVNNAESCGY LLSKLAGGAD ISDRTHPATS SQAYYHEMVV GEDKTENGQL FPEDKKTILS
301: EEIQDNINEE NACIPLGCKV ETQQRGVRRR CLVFEAAGYS HRTVQKESVG DLSFSTCKGK SSAQNHRNPG KTPSPHVFRG IGLHLNALAL TSKDKMACQD
401: PLATALVPSL KTEQDVHGNL LSAGGNFVHS GSGLLDLQMD NDDCSVGGFL GNDHNSSQSS SPPKKRRKSD NGDDDSCKRC SCKKSKCLKL YCECFAAGVY
501: CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI RMSEAGQETQ EDPKNTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSNN CRCETCKNTF
601: GTRDVAVSAE NEEMKQEGDQ TESCEKEKEN DQQKANVHSE DHKLVELVVP ITPPLDVSSS LLKQPNFSNA KPPRPCKARS GSSSRSSKAS ETVQSRKISK
701: VGDSVFIEEM PDILREPSSP GIVKTCSPNG KRVSPPHNAL SISPNRKGGR KLILKSIPSF PSLAGDTNGG SAICSSDSAT ALALGPS
001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH
Arabidopsis Description
TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.