Factsheet for GSMUA_Achr8P20460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10600_001	Banana	nucleus	68.45	74.66
GSMUA_Achr9P25670_001	Banana	nucleus	63.85	62.0
Os03t0638300-01	Rice	cytosol	8.7	61.95
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	17.14	48.25
VIT_05s0020g03880.t01	Wine grape	nucleus	42.61	44.95
CDY54822	Canola	cytosol, plastid	29.19	42.81
AT3G22760.1	Thale cress	nucleus	32.05	42.36
CDY10668	Canola	nucleus, plastid	30.06	42.16
CDY67857	Canola	nucleus, plastid	31.55	42.05
Bra023810.1-P	Field mustard	nucleus, plastid	30.43	41.39
CDY64240	Canola	cytosol, plastid	30.56	41.28
Bra036900.1-P	Field mustard	nucleus, plastid	33.04	41.24
Bra033920.1-P	Field mustard	plastid	29.19	40.87
AT4G14770.1	Thale cress	nucleus	34.04	40.65
CDY29770	Canola	nucleus, plastid	32.67	40.65
CDY42785	Canola	nucleus, plastid	32.92	40.33
VIT_14s0030g01800.t01	Wine grape	nucleus	40.25	40.2
KRH27657	Soybean	nucleus	38.39	39.92
CDY54821	Canola	nucleus	33.66	39.91
AT3G22780.1	Thale cress	nucleus	34.29	39.71
KRH77830	Soybean	nucleus	38.01	39.53
KRH35487	Soybean	nucleus	37.27	39.47
Solyc09g082500.2.1	Tomato	nucleus	40.62	39.45
KRG91344	Soybean	nucleus	37.76	39.28
PGSC0003DMT400082098	Potato	nucleus	40.25	39.23
TraesCS4D01G026100.1	Wheat	nucleus	37.89	38.75
CDY64242	Canola	nucleus	12.67	38.64
Os07t0176200-01	Rice	nucleus	37.39	38.49
TraesCS4B01G028500.1	Wheat	nucleus	37.27	38.02
OQU88523	Sorghum	nucleus	36.15	37.5
TraesCS5A01G053800.1	Wheat	nucleus	35.53	37.39
TraesCS5B01G062400.1	Wheat	nucleus	35.4	37.25
TraesCS5D01G065300.1	Wheat	nucleus	35.28	37.12
HORVU5Hr1G012950.1	Barley	nucleus	35.28	37.08
EES17353	Sorghum	nucleus	35.28	37.03
Os12t0605500-01	Rice	nucleus	34.29	36.32
TraesCS4A01G284600.2	Wheat	nucleus	37.39	35.96
CDY10669	Canola	nucleus	33.17	35.7
Bra033919.1-P	Field mustard	nucleus	32.92	35.43
Zm00001d018930_P003	Maize	nucleus	35.28	34.38
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	34.91	33.61
Zm00001d031009_P004	Maize	golgi, plasma membrane	34.66	33.53
HORVU4Hr1G004280.15	Barley	nucleus, plastid	36.65	31.96
EER93767	Sorghum	nucleus	29.32	31.59
Zm00001d033274_P005	Maize	nucleus	27.58	30.25
GSMUA_Achr2P17070_001	Banana	nucleus	21.86	28.25
CDX94892	Canola	nucleus, plastid	33.17	21.51
CDX92957	Canola	nucleus, plastid	31.93	21.13
Bra001884.1-P	Field mustard	nucleus, plastid	31.18	20.52
GSMUA_Achr9P06330_001	Banana	cytosol	10.68	17.0
GSMUA_Achr6P26760_001	Banana	nucleus	11.68	16.88
GSMUA_Achr2P09150_001	Banana	cytosol	10.93	16.86
GSMUA_Achr3P31550_001	Banana	nucleus	10.81	14.87

Protein Annotations

EnsemblPlants:GSMUA_Achr8P20460_001	EnsemblPlants:GSMUA_Achr8T20460_001	EnsemblPlantsGene:GSMUA_Achr8G20460_001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	SEG:seg
SMART:SM01114	UniParc:UPI000296C6CF	UniProt:M0TS49	MapMan:15.5.9	:	:

Description

Putative tesmin/TSO1-like CXC domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G20460_001]

Coordinates

chr8:+:25660490..25667624

Molecular Weight (calculated)

87979.4 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.594

Length

805 amino acids

Sequence
(BLAST)

001: MDTPERAKIA GTPLSKFEDS PIYNFINNLS PIQPVKSIDS VPIAHTHQPL NFASLSSIFS SPHDNPPRET RFLTRHPFTD YFKQENFSDN VGESSLCPEV
101: SDAGRPSGFT SSSQENCTMT CSLNEATVDP PDECPALPST FPQSTQYYSG SPDHNVEPCL GIKMDLKLDV GHTPVEFHFV QNGVERRKVL FAMEDGVQEN
201: LPLELNKDKG VGCVWESLIP DDGQSLLIFD SSTESEAHKG VSEKAVDNDG HSIVSLLSNC TENADHLQKT KPDISHGPCV HNVNQDPSQN CSKVFEKEDE
301: TDHATKMLSD MCHDQVDSHQ QRGMRRRCLV FEVASVSKRN MYSDSKLNPL TSLSFKGKSV CDTKNLKPEI RESLYALPGI GLHLNALATT SKDRMVNKET
401: LASEKQIISN PCSVGSLTST TAGRNSLRKS SAVEKDLCPS GSEVDLQIVS DDAPKDATPN ICEELSQGSP KKKRRKSGNG GESDGCKRCN CKKSKCLKLY
501: CECFAAGVYC SEPCSCQGCF NKPIHEETVL ATRRQIESRN PLAFAPKVIR TSESGLEMGD DDKKTPASAR HKRGCNCKKS NCLKKYCECY QGGVGCSIGC
601: RCEGCKNLFG RKDGFLPRFE ELEQAEKEAN ACEKENESPG DDQQNTSIQI DEHHSSGHIL PITPYQSCRL SVELPFSSIA SSTTSTKLSI GRSPALYGSH
701: MLRKCEMVLP PPKLENNVST VVEDDTPAIL RPTVSPTTTG IRIASPNQKR VSPPHGGVGL SPPSRKGCRK LILRSIPSFP PLGSDVSAEH PVNYSNSSFG
801: SSTVI

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.