CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036900.1-P	Field mustard	nucleus, plastid	93.61	95.35
CDY29770	Canola	nucleus, plastid	93.61	95.05
AT4G14770.1	Thale cress	nucleus	77.17	75.22
CDY67857	Canola	nucleus, plastid	54.49	59.27
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	25.57	58.74
Os03t0638300-01	Rice	cytosol	9.89	57.52
CDY64240	Canola	cytosol, plastid	51.29	56.54
CDY54822	Canola	cytosol, plastid	47.03	56.28
CDY10668	Canola	nucleus, plastid	49.01	56.1
CDY54821	Canola	nucleus	52.21	50.52
CDY64242	Canola	nucleus	18.42	45.83
CDY10669	Canola	nucleus	51.45	45.19
KRH77830	Soybean	nucleus	47.03	39.92
KRH35487	Soybean	nucleus	46.12	39.87
KRH27657	Soybean	nucleus	46.88	39.79
KRG91344	Soybean	nucleus	46.42	39.41
PGSC0003DMT400082098	Potato	nucleus	46.73	37.17
Solyc09g082500.2.1	Tomato	nucleus	46.88	37.15
VIT_14s0030g01800.t01	Wine grape	nucleus	43.84	35.73
GSMUA_Achr9P10600_001	Banana	nucleus	38.2	34.01
GSMUA_Achr8P20460_001	Banana	nucleus	40.33	32.92
CDY44573	Canola	cytosol	6.85	31.69
CDX79489	Canola	cytosol	15.53	31.58
OQU88523	Sorghum	nucleus	37.14	31.44
TraesCS4D01G026100.1	Wheat	nucleus	37.44	31.26
Os12t0605500-01	Rice	nucleus	35.92	31.05
Os07t0176200-01	Rice	nucleus	36.83	30.95
TraesCS5A01G053800.1	Wheat	nucleus	35.62	30.59
TraesCS5D01G065300.1	Wheat	nucleus	35.62	30.59
HORVU5Hr1G012950.1	Barley	nucleus	35.62	30.55
TraesCS4B01G028500.1	Wheat	nucleus	36.53	30.42
GSMUA_Achr9P25670_001	Banana	nucleus	38.2	30.28
TraesCS5B01G062400.1	Wheat	nucleus	35.16	30.2
CDX74164	Canola	nucleus	23.74	29.89
CDY71540	Canola	nucleus, plastid	12.02	29.81
TraesCS4A01G284600.2	Wheat	nucleus	37.6	29.51
EES17353	Sorghum	nucleus	34.25	29.34
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	23.74	28.73
Zm00001d018930_P003	Maize	nucleus	36.07	28.69
CDY67603	Canola	cytosol	12.18	27.87
CDX92957	Canola	nucleus, plastid	51.45	27.8
CDX94892	Canola	nucleus, plastid	52.21	27.64
EER93767	Sorghum	nucleus	31.35	27.58
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	34.55	27.15
Zm00001d031009_P004	Maize	golgi, plasma membrane	33.49	26.44
HORVU4Hr1G004280.15	Barley	nucleus, plastid	36.99	26.33
Zm00001d033274_P005	Maize	nucleus	28.61	25.61
CDY19795	Canola	nucleus	14.61	21.1
CDY20184	Canola	cytosol	10.65	20.59
CDY28377	Canola	nucleus	10.2	20.43
CDY05722	Canola	nucleus	15.22	20.2
CDY31991	Canola	nucleus	15.37	19.96
CDY05340	Canola	nucleus	14.46	19.87
CDX88196	Canola	nucleus	14.92	19.22
CDY65712	Canola	nucleus	13.39	19.21
CDX80536	Canola	nucleus	14.76	18.69
CDX97461	Canola	nucleus	15.68	18.2
CDY66476	Canola	nucleus	15.83	18.15
CDX92907	Canola	nucleus	14.76	17.38
CDY35239	Canola	nucleus	15.22	17.15
CDY06853	Canola	cytosol, nucleus, plastid	15.22	7.1

Protein Annotations

EnsemblPlants:CDY42785	EnsemblPlantsGene:GSBRNA2T00075344001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY42785	ProteinID:CDY42785.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EE2B9C	UniProt:A0A078HWC5	MapMan:15.5.9	:

Description

BnaC01g22810DBnaC01g22810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWC5]

Coordinates

chrLK032534:-:127528..131132

Molecular Weight (calculated)

71956.3 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.656

Length

657 amino acids

Sequence
(BLAST)

001: MDTPQKSITQ IETPVSKSRV EDSPVFNYIN SLSPIRPVKS IPNPHQFSAL NFTSPPSVFT SPHLTSSHKE SRFFKTHHPS PDPTIPVQES PDDSTSNEGA
101: AAEAEVTPNF NIDASTEMEQ PHIAKETNLD DLPLAVSPCG RETTGDLSLV PYASPPREEN GEDDTGMEMY GNVQGKNETP DWDRLIADSS EFLIFSSPND
201: SEAFRCLMMQ RASPSQAPSV MMPTMQPGSI NEPESSIASP YGAVSVLHRG IRRRCLDFEM PGNKQTSSEN NTSACGSSSR CVVPSIGLHL NALLMSTKDC
301: KTNNTTHDYS CSEKYQVGLQ GSSSTLQETL DQTETETRDL EDVPVEPTLE ELHLSSPKKK RQLEAGEGES CKRCNCKKSK CLKLYCECFA AGVYCIEPCS
401: CIDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIKSSDLV LETGDDASKT PASARHKRGC NCKKSNCLKK YCECFQGGVG CSINCRCEGC KNAFGRKDGS
501: AIVDMEAEQE EENETSGKNR RAKTQENSEV YLMRKEESSA LPATPMSVYR QQLVQLKNMM PPPQSVLGVG SSSSGMFNSQ YTRKLEMKSL ETVAEDGAEE
601: MPEILSHSSI DNVNAVSPNG KRVSPPHLDS SSSGRRSGGR KLILQSIPTF PSLTPQH

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.