CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009859.1-P	Field mustard	nucleus	98.04	98.23
CDX80536	Canola	nucleus	92.35	90.75
CDY65712	Canola	nucleus	66.86	74.45
CDY19795	Canola	nucleus	66.08	74.07
CDY05340	Canola	nucleus	61.37	65.48
AT5G25790.2	Thale cress	nucleus	62.75	63.49
CDY44573	Canola	cytosol	16.27	58.45
CDY71540	Canola	nucleus, plastid	25.69	49.43
CDY67603	Canola	cytosol	26.86	47.74
HORVU7Hr1G081540.1	Barley	plastid	22.75	39.73
Os06t0332700-00	Rice	nucleus	22.75	38.28
CDY05722	Canola	nucleus	35.69	36.77
CDY31991	Canola	nucleus	36.47	36.76
CDX97461	Canola	nucleus	37.06	33.39
CDY35239	Canola	nucleus	38.04	33.28
CDY66476	Canola	nucleus	36.67	32.64
CDX92907	Canola	nucleus	34.31	31.36
Os02t0274600-00	Rice	cytosol, nucleus	26.86	31.35
CDY28377	Canola	nucleus	19.41	30.18
TraesCS7D01G338500.1	Wheat	nucleus, plastid	28.63	30.04
CDY20184	Canola	cytosol	19.8	29.71
TraesCS7B01G242300.1	Wheat	nucleus	28.24	29.69
TraesCS7A01G341100.2	Wheat	nucleus, plastid	28.24	29.63
EER89807	Sorghum	cytosol	29.02	29.08
Zm00001d037461_P001	Maize	cytosol	28.63	28.57
KXG30022	Sorghum	nucleus, plastid	28.04	26.34
Zm00001d015990_P001	Maize	nucleus	27.25	26.23
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	18.82	26.02
Os08t0363900-00	Rice	cytosol	18.04	25.92
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	13.33	23.78
TraesCS2B01G144400.2	Wheat	plastid	27.45	23.77
TraesCS2A01G122300.2	Wheat	plastid	27.06	23.47
HORVU2Hr1G021360.2	Barley	plastid	27.84	23.32
TraesCS2D01G125000.1	Wheat	plastid	26.67	23.13
CDY64242	Canola	nucleus	9.41	18.18
CDY54822	Canola	cytosol, plastid	19.02	17.67
CDY10668	Canola	nucleus, plastid	18.82	16.72
CDY64240	Canola	cytosol, plastid	19.41	16.61
CDX79489	Canola	cytosol	10.39	16.41
CDY67857	Canola	nucleus, plastid	19.22	16.23
CDY29770	Canola	nucleus, plastid	19.02	14.99
CDY42785	Canola	nucleus, plastid	19.22	14.92
CDY54821	Canola	nucleus	19.8	14.87
CDY06853	Canola	cytosol, nucleus, plastid	38.63	13.99
CDX74164	Canola	nucleus	14.12	13.79
CDY10669	Canola	nucleus	19.22	13.1
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	13.92	13.08
CDX92957	Canola	nucleus, plastid	20.2	8.47
CDX94892	Canola	nucleus, plastid	20.39	8.38

Protein Annotations

EnsemblPlants:CDX88196	EnsemblPlantsGene:GSBRNA2T00147659001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDX88196	ProteinID:CDX88196.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EF348C	MapMan:15.5.9	:	:

Description

BnaA06g27870D

Coordinates

chrLK031854:-:1301866..1304415

Molecular Weight (calculated)

56644.6 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.922

Length

510 amino acids

Sequence
(BLAST)

001: MEKSDHDLSS NQNPLARQLD FSVPAAAAET KMIDSSQETE KKQSQSLLLD SQSYLEDQRD EELSESSQPT EEQHRLGVKS LEEPSATEDV TPPPQKPPIH
101: RFGHPLEKCR VSKQEQMEAE SKDGTPSKQK HCNCKASRCL KLYCECFASG SYCNGCNCVN CQNNLENESA RQEAITGTLE RNPDAFKPKI AGSPHGINDL
201: QEDVRQLLIL GKHSKGCHCK KSGCLKKYCE CYQANVLCSE NCRCQDCKNF EGSEERSALL HGSHHVSETY IQQTTNAALS RAVSTSGFLN TPESRKRKSK
301: DASSAVPHLV QNQAVNRVIR NGDTSLFSIP NNKAVSGSPT CTYRSSLSNT IQPRHVKDLC TLLVATSLDV ANKYSDKRRK HEKDPSLDPA QRDANEINDS
401: PDCVLDSSRM DEKPVSPATR ALMCDDEHVI TSEKEASARV KTSEEKEDAD TSTEIYLEKE RQILSSFRDF LIQLSNRGSI KAGANTKTST NPSRKEPQDE
501: EQSHRDSSLG

Best Arabidopsis Sequence Match ( AT5G25790.1 )
(BLAST)

001: MEDLSNQNLL PRQSDISIPA EKMDSFQKSL EPPPCSPVKS SQQSETEVTP PQKPPLHQFG HNQVQKNRVS NQDPSTSRRH NEVESKENTP NKQQKHCNCK
101: NSKCLKLYCE CFASGSYCNG CNCVNCHNKL ENESSRQVAI SGILERNPDA FKPKIAGSPH GMKDLQENVQ QVLLIGKHSK GCHCRKSGCL KKYCECYQAN
201: ILCSENCRCQ DCKNFEGSEE RKALLHGSQV SDTYIQQMTN AAVNRAIDMS AYLYPPESRK RKSKDISDSV VSSYGVQYQR ANHVRRNGEN SLFSLPNNKA
301: VSGSTTSAYR SSWSNTFQPH HVRELCSLLV SNSVDVANKL SDKGRKNDKG PSSLDGAQRV ANEINDSPDC VLDANRMDEK PISPATRALM CDEEHEIGSE
401: KETSARVKTS QEKEDTDTSS GIYLEQERQI LSIFRDYLIQ LSNRARINGK NIKSNTNPS

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT5G25790]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.