Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G338500.1 | Wheat | nucleus, plastid | 96.49 | 96.3 |
| TraesCS7A01G341100.2 | Wheat | nucleus, plastid | 95.46 | 95.27 |
| HORVU7Hr1G081540.1 | Barley | plastid | 53.2 | 88.36 |
| Os06t0332700-00 | Rice | nucleus | 41.03 | 65.68 |
| EER89807 | Sorghum | cytosol | 63.3 | 60.31 |
| Zm00001d037461_P001 | Maize | cytosol | 61.44 | 58.32 |
| CDY65712 | Canola | nucleus | 28.25 | 29.91 |
| Bra036551.1-P | Field mustard | nucleus | 27.63 | 29.39 |
| TraesCS3B01G331700.1 | Wheat | plastid | 37.11 | 29.27 |
| CDY19795 | Canola | nucleus | 27.22 | 29.01 |
| AT5G25790.2 | Thale cress | nucleus | 29.48 | 28.37 |
| Bra009859.1-P | Field mustard | nucleus | 29.69 | 28.29 |
| CDX88196 | Canola | nucleus | 29.69 | 28.24 |
| CDY28377 | Canola | nucleus | 18.56 | 27.44 |
| CDX80536 | Canola | nucleus | 29.07 | 27.17 |
| AT3G16160.1 | Thale cress | nucleus | 20.41 | 26.9 |
| Bra021165.1-P | Field mustard | nucleus | 17.94 | 26.69 |
| CDY20184 | Canola | cytosol | 18.35 | 26.18 |
| CDY05340 | Canola | nucleus | 25.57 | 25.94 |
| TraesCS1B01G411800.1 | Wheat | nucleus | 13.81 | 25.57 |
| TraesCS3B01G249700.1 | Wheat | nucleus | 13.61 | 25.29 |
| TraesCS2B01G144400.2 | Wheat | plastid | 29.9 | 24.62 |
| TraesCS5B01G062200.1 | Wheat | nucleus, plastid | 13.2 | 17.78 |
| TraesCS1B01G340500.1 | Wheat | cytosol, plastid | 12.99 | 16.84 |
| TraesCS5B01G062400.1 | Wheat | nucleus | 17.53 | 11.11 |
| TraesCS4B01G028500.1 | Wheat | nucleus | 17.11 | 10.52 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G242300.1 | EnsemblPlantsGene:TraesCS7B01G242300 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| PANTHER:PTHR12446 | PANTHER:PTHR12446:SF35 | PFAM:PF03638 | PFscan:PS51634 | SEG:seg | SMART:SM01114 |
| MapMan:15.5.9 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:450563850..450569641
Molecular Weight (calculated)
52707.9 Da
IEP (calculated)
7.880
GRAVY (calculated)
-0.714
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEKQHNAQ PPAPPAAAPP QPRAVAPAHP LMHSARWPVS FTPIKPVVEI KSVTPPKRKK QCNCKNSHCL KLYCECFAAG LYCDGCNCKQ CGNKVENEHA
101: RQEAINSTKL RNPKAFQPKI ENVPSTLSVR KDAGAPSVPK HNKGCHCKKS GCLKKYCECF QANILCSKNC KCMDCKNFEG SEELQAIIQG DNASDKNNVQ
201: QAANVTLNGA IGSSGYKYSP VRRKRHPEDP LGPEANHLDA SQVASSSGLE GCIGYQSRSK MVYRSPLANT IHPTDVNDLA NHLVIVCRKA TETFLTIADN
301: KVEMEVERGI YTNADLNNDK MKNREVQNGG VSQPDVATHI DQRTAGDLES PCNNTQEDYR PASPGTQALL CDEQGTAFGS DYRTSFPSAF YDQDTPELSA
401: LQEKTVLTGF RDYLRLLITR GKINANNSAG MTEANTSSEP AMELDARRNH GATTGPGVSS LPSEAVERPK APGGPENPRT SDPSA
101: RQEAINSTKL RNPKAFQPKI ENVPSTLSVR KDAGAPSVPK HNKGCHCKKS GCLKKYCECF QANILCSKNC KCMDCKNFEG SEELQAIIQG DNASDKNNVQ
201: QAANVTLNGA IGSSGYKYSP VRRKRHPEDP LGPEANHLDA SQVASSSGLE GCIGYQSRSK MVYRSPLANT IHPTDVNDLA NHLVIVCRKA TETFLTIADN
301: KVEMEVERGI YTNADLNNDK MKNREVQNGG VSQPDVATHI DQRTAGDLES PCNNTQEDYR PASPGTQALL CDEQGTAFGS DYRTSFPSAF YDQDTPELSA
401: LQEKTVLTGF RDYLRLLITR GKINANNSAG MTEANTSSEP AMELDARRNH GATTGPGVSS LPSEAVERPK APGGPENPRT SDPSA
001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT ANGVSQTAKQ PSQLTTTTTT PNTSSQTHLH KTPALSEKKD L
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT ANGVSQTAKQ PSQLTTTTTT PNTSSQTHLH KTPALSEKKD L
Arabidopsis Description
Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT2G20110]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.