Factsheet for TraesCS5B01G062200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G065500.1	Wheat	nucleus, plastid	99.17	99.44
TraesCS5A01G054200.1	Wheat	nucleus, plastid	95.83	96.64
HORVU5Hr1G013160.11	Barley	nucleus, plastid	86.39	76.04
Os12t0605300-01	Rice	nucleus	76.39	67.57
Zm00001d031008_P001	Maize	nucleus	70.56	64.47
EES17352	Sorghum	nucleus	71.67	63.08
Zm00001d041444_P002	Maize	nucleus	68.33	62.44
TraesCS1B01G340500.1	Wheat	cytosol, plastid	38.06	36.63
TraesCS1B01G411800.1	Wheat	nucleus	12.5	17.18
CDX79489	Canola	cytosol	15.28	17.03
TraesCS3B01G249700.1	Wheat	nucleus	11.94	16.48
TraesCS5B01G062400.1	Wheat	nucleus	28.06	13.2
TraesCS7B01G242300.1	Wheat	nucleus	17.78	13.2
TraesCS4B01G028500.1	Wheat	nucleus	27.5	12.55
Bra001128.1-P	Field mustard	nucleus	16.39	11.32
CDX74164	Canola	nucleus	16.39	11.3
TraesCS3B01G331700.1	Wheat	plastid	19.17	11.22
TraesCS2B01G144400.2	Wheat	plastid	18.33	11.21
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	16.11	10.68
AT3G04850.1	Thale cress	cytosol	18.06	10.17

Protein Annotations

EnsemblPlants:TraesCS5B01G062200.1	EnsemblPlantsGene:TraesCS5B01G062200	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF44	PFAM:PF03638	PFscan:PS51634	SEG:seg	SMART:SM01114
MapMan:15.5.9	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:69856166..69859463

Molecular Weight (calculated)

40026.3 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.716

Length

360 amino acids

Sequence
(BLAST)

001: MALVSAPAPA AVWTAVSPPA EANGSSDRKK KRKAEDGEGC RTCSCKKSRC LKLYCVCFAS GSQCSELCGC DPCYNKPIHG VQQNTPPGLP LQVVRPAEAG
101: QNSTEFARYQ MDFFRRKCTC KKSGCLKKYC DCYQGGAGCS INCKCDDCKN PYGKKVGVIL DGKSILATPT PGPTPIERNG TEVISSDDDD DDEDDYYMNR
201: PLSPIPPSPV SRESSFQQET LVGVEVHTVN GHLYPKPLTQ VRPETWQLSR RPAEEARGEQ WRYMRRPSED GTSDAMEGHA DPKFHHQRDN NNSKQRESPA
301: DNRFSIPRCI EVMNGMADLS PVDKSLAPDV FLDPSNREIF LSLSVDIRTM WLKRKMRSLV

Best Arabidopsis Sequence Match ( AT4G14770.2 )
(BLAST)

001: MDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE VPAEGEDTKG LNIDDCMREE
101: ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE AFRCFMMQRA SNSEARFRNG
201: VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD CKTNVTQDYS CSANIQVGLQ
301: RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCIDCFNK PIHEDVVLAT
401: RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSSIDMEAE QEEENETSEK
501: SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE KSFETVAVDG AEQMPEILIH
601: SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.