CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031008_P001	Maize	nucleus	87.04	90.36
Zm00001d041444_P002	Maize	nucleus	79.46	82.49
TraesCS5D01G065500.1	Wheat	nucleus, plastid	63.33	72.14
TraesCS5B01G062200.1	Wheat	nucleus, plastid	63.08	71.67
TraesCS5A01G054200.1	Wheat	nucleus, plastid	62.35	71.43
Os12t0605300-01	Rice	nucleus	68.7	69.04
HORVU5Hr1G013160.11	Barley	nucleus, plastid	63.81	63.81
EES19781	Sorghum	cytosol	35.21	40.11
CDX79489	Canola	cytosol	12.71	16.1
EES17353	Sorghum	nucleus	24.94	13.3
Bra001128.1-P	Field mustard	nucleus	16.87	13.24
CDX74164	Canola	nucleus	16.87	13.22
OQU88523	Sorghum	nucleus	24.45	12.89
EER89807	Sorghum	cytosol	15.89	12.77
EER93767	Sorghum	nucleus	22.74	12.45
AT3G04850.1	Thale cress	cytosol	18.83	12.05
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	15.89	11.97
KXG33424	Sorghum	nucleus	17.6	11.75
KXG30022	Sorghum	nucleus, plastid	15.4	11.6

Protein Annotations

EnsemblPlants:EES17352	EnsemblPlantsGene:SORBI_3008G160500	EntrezGene:8076665	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF44	PFAM:PF03638	PFscan:PS51634	ProteinID:EES17352
ProteinID:EES17352.1	RefSeq:XP_002443514.1	SEG:seg	SMART:SM01114	unigene:Sbi.10068	UniParc:UPI0001A88318
UniProt:C5YRG9	MapMan:15.5.9	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:59383969..59389572

Molecular Weight (calculated)

44241.7 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.543

Length

409 amino acids

Sequence
(BLAST)

001: MDAEVGAPNL PLPEEPAGSE PDDARLSPPR PAPAPPPPPP PPAPAPAPAP VQALTPAAEA AAPTASAAVS PPAPAPAPAP AEANGTSDRK RRRKAEDGDG
101: CKTCSCKKSR CMKLYCVCFA SGSRCTESCG CEPCENKQPL QVAPRTALIL PLKPVQTSEA GQDIVEQVIR SPMDLIRRKC TCKKSGCLKK YCDCYQGGAG
201: CSINCKCDDC RNPFGRKVGV ILDGKSSVAA PILQERNGTE VDSSDDEDDF YMNRQLSPIP PSPVSRESSF QQETLVGVEV QTMNGHLYPK PLAQVRPEPP
301: SWQLSRRPVE EPRGEIWRFS RRPSEDGTSD AMEAHAIAPR ESKKPEIHGD NRFSIPRCIE VMSAMAELSP VEKSLAPDVF LDASNREIFL SLSVDIRPMW
401: LRRKMKSLV

Best Arabidopsis Sequence Match ( AT4G14770.2 )
(BLAST)

001: MDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE VPAEGEDTKG LNIDDCMREE
101: ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE AFRCFMMQRA SNSEARFRNG
201: VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD CKTNVTQDYS CSANIQVGLQ
301: RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCIDCFNK PIHEDVVLAT
401: RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSSIDMEAE QEEENETSEK
501: SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE KSFETVAVDG AEQMPEILIH
601: SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.