CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018930_P003	Maize	nucleus	84.79	79.66
Os07t0176200-01	Rice	nucleus	74.87	74.3
TraesCS4D01G026100.1	Wheat	nucleus	71.78	70.78
TraesCS4B01G028500.1	Wheat	nucleus	70.62	69.45
TraesCS4A01G284600.2	Wheat	nucleus	71.26	66.07
HORVU4Hr1G004280.15	Barley	nucleus, plastid	70.75	59.48
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	16.75	45.45
GSMUA_Achr9P10600_001	Banana	nucleus	36.34	38.21
AT4G14770.1	Thale cress	nucleus	32.73	37.69
Bra036900.1-P	Field mustard	nucleus, plastid	31.19	37.52
CDY29770	Canola	nucleus, plastid	31.19	37.4
CDY42785	Canola	nucleus, plastid	31.44	37.14
CDY10668	Canola	nucleus, plastid	27.45	37.11
CDY67857	Canola	nucleus, plastid	28.87	37.09
CDY54822	Canola	cytosol, plastid	25.9	36.61
CDY64240	Canola	cytosol, plastid	28.09	36.58
Bra033920.1-P	Field mustard	plastid	27.06	36.52
Bra023810.1-P	Field mustard	nucleus, plastid	27.84	36.49
AT3G22760.1	Thale cress	nucleus	28.48	36.29
GSMUA_Achr8P20460_001	Banana	nucleus	37.5	36.15
EES17353	Sorghum	nucleus	35.44	35.85
VIT_05s0020g03880.t01	Wine grape	nucleus	34.54	35.12
KRH27657	Soybean	nucleus	34.92	35.01
KRH77830	Soybean	nucleus	34.41	34.5
GSMUA_Achr9P25670_001	Banana	nucleus	36.47	34.14
KRH35487	Soybean	nucleus	33.25	33.95
KRG91344	Soybean	nucleus	33.63	33.72
CDY54821	Canola	nucleus	29.38	33.58
AT3G22780.1	Thale cress	nucleus	30.03	33.53
CDY64242	Canola	nucleus	11.34	33.33
VIT_14s0030g01800.t01	Wine grape	nucleus	33.76	32.51
PGSC0003DMT400082098	Potato	nucleus	34.15	32.08
Solyc09g082500.2.1	Tomato	nucleus	34.15	31.97
EER93767	Sorghum	nucleus	29.25	30.39
Bra033919.1-P	Field mustard	nucleus	28.99	30.08
CDY10669	Canola	nucleus	28.87	29.95
EES19781	Sorghum	cytosol	13.02	28.13
EES17352	Sorghum	nucleus	12.89	24.45
Bra001884.1-P	Field mustard	nucleus, plastid	29.25	18.56
CDX92957	Canola	nucleus, plastid	28.99	18.5
CDX94892	Canola	nucleus, plastid	29.51	18.45
EER89807	Sorghum	cytosol	11.34	17.29
KXG30022	Sorghum	nucleus, plastid	11.08	15.84
KXG33424	Sorghum	nucleus	12.37	15.66

Protein Annotations

EnsemblPlants:OQU88523	EnsemblPlantsGene:SORBI_3002G050700	EntrezGene:8081186	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	ncoils:Coil	PANTHER:PTHR12446	PANTHER:PTHR12446:SF43	PFAM:PF03638	PFscan:PS51634
ProteinID:OQU88523	ProteinID:OQU88523.1	RefSeq:XP_002459413.1	SEG:seg	SMART:SM01114	UniParc:UPI0001A83107
UniProt:A0A1W0W2E2	MapMan:15.5.9	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:4811737..4817257

Molecular Weight (calculated)

83364.4 Da

IEP (calculated)

6.402

GRAVY (calculated)

-0.599

Length

776 amino acids

Sequence
(BLAST)

001: MDTPDRAAAP SAASRAEDSP VFSFLNNLSP IEPLKSAYNT NSLQGFQSIN ITSISSIFTS PHDNVNKEPR LPKSSLGDIS ENEVCADGAD TNKPSKSSNA
101: VRLFACTSTV TRETHSVTCS GVVDPPTGPC DLAQPGQFDN GSPDHNTTPC HGVRSDLKLD KTRKLEAAQT VKNTLEKRKC LFSTDIQLLD GSSEPVNDND
201: QVLGCEWSDL ISTTSAELLA FDSTMDEHHR GVHLAAKNAE SCGYLLSKLT GDGDVSDRAH PSASGQVYYQ ELVMGEDQTE NAEIFQDGQE TISTEEIQDN
301: ICEANGCLPL EYKVEGQQQR GVRRRCLVFE ASGFSNSVVK KGTVENLSVS TCKGKSPVQT QPRGLRGIGL HLNALALTPK GKMACQDPTA SALLPSSASE
401: KDVHGRLLSA GENFTHSGGE LLEFPVDDCS AGGFPVNDHV SGQSVSPQKK RRKTDNGDDG EACKRCSCKK SKCLKLYCEC FAAGVYCSEP CSCQGCLNKP
501: IHEEIVLSTR KQIEFRNPLA FAPKVIRMSD AGLETGEDPN NTPASARHKR GCNCKKSSCL KKYCECYQGG VGCSTNCRCE SCKNTFGRRD AESELTEEMK
601: QESEQTENCS QEKENGQQKA NVQSEDHPLL DLVPITPPFD LSSSLLKLPN FSSAKPPRPS KPRSVNSRSS ASKATATVQP CKSSKIAVSG IDEEMPDILK
701: EPNSPSNCVK TTSPNGKRVS PPHNALSVSP NRKGGRKLIL KSIPSFPSLA GDTISGSAMN NTDSTFSVSP LTLGPS

Best Arabidopsis Sequence Match ( AT4G14770.3 )
(BLAST)

001: MQDSPVFNYI NSLSPIRPVR SIPNPNQFSS LNFTSPPSVF TSPHLTSSHK ESRFFKTHNS SSSDPTNSVE SQEDESTSHE EVPAEGEDTK GLNIDDCMRE
101: EASVETNLDD SVASPCGGNT TDLSLVPYAP TRGEDGSCED NGMELQKMHD NVQGKTETPD WESLIADASE LLIFDSPDAS EAFRCFMMQR ASNSEARFRN
201: GVEKQTMQHD SNKEPESANA IPYEAVSLLH RGIRRRCLDF EMPGNKQTSS ENNTAACESS SRCVVPSIGL HLNAILMSSK DCKTNVTQDY SCSANIQVGL
301: QRSISTLQDS LDQTENEIRE DADQDVPVEP ALQELNLSSP KKKRVKLDSG EGESCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCIDCFN KPIHEDVVLA
401: TRKQIESRNP LAFAPKVIRN SDSVQETGDD ASKTPASARH KRGCNCKKSN CLKKYCECYQ GGVGCSINCR CEGCKNAFGR KDGSSIDMEA EQEEENETSE
501: KSRTAKSQQN TEVLMRKDMS SALPTTPTPI YRPELVQLPF SSSKNRMPPP QSLLGGGSSS GIFNSQYLRK PDISLSQSRI EKSFETVAVD GAEQMPEILI
601: HSPIPNIKSV SPNGKRVSPP HMESSSSGSI LGRRNGGRKL ILQSIPSFPS LTPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.