Factsheet for PGSC0003DMT400082098

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082500.2.1	Tomato	nucleus	96.85	96.5
VIT_05s0020g03880.t01	Wine grape	nucleus	54.24	58.72
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	18.89	54.55
Os03t0638300-01	Rice	cytosol	7.26	53.1
KRH77830	Soybean	nucleus	46.73	49.87
KRH27657	Soybean	nucleus	45.52	48.58
CDY54822	Canola	cytosol, plastid	31.96	48.09
CDY10668	Canola	nucleus, plastid	33.41	48.08
AT4G14770.1	Thale cress	nucleus	39.23	48.07
CDY29770	Canola	nucleus, plastid	37.29	47.6
Bra036900.1-P	Field mustard	nucleus, plastid	37.05	47.44
KRH35487	Soybean	nucleus	43.58	47.37
CDY67857	Canola	nucleus, plastid	34.62	47.35
Bra023810.1-P	Field mustard	nucleus, plastid	33.54	46.79
KRG91344	Soybean	nucleus	43.83	46.77
CDY42785	Canola	nucleus, plastid	37.17	46.73
CDY64240	Canola	cytosol, plastid	33.29	46.14
Bra033920.1-P	Field mustard	plastid	31.96	45.91
AT3G22780.1	Thale cress	nucleus	38.38	45.61
CDY54821	Canola	nucleus	37.05	45.07
AT3G22760.1	Thale cress	nucleus	33.17	44.99
VIT_14s0030g01800.t01	Wine grape	nucleus	43.1	44.17
CDY64242	Canola	nucleus	13.56	42.42
CDY10669	Canola	nucleus	37.05	40.91
Bra033919.1-P	Field mustard	nucleus	36.8	40.64
GSMUA_Achr9P10600_001	Banana	nucleus	36.2	40.51
GSMUA_Achr8P20460_001	Banana	nucleus	39.23	40.25
GSMUA_Achr9P25670_001	Banana	nucleus	37.17	37.03
OQU88523	Sorghum	nucleus	32.08	34.15
Os07t0176200-01	Rice	nucleus	31.84	33.63
TraesCS4D01G026100.1	Wheat	nucleus	31.48	33.04
Os12t0605500-01	Rice	nucleus	30.02	32.63
HORVU5Hr1G012950.1	Barley	nucleus	30.02	32.38
TraesCS4B01G028500.1	Wheat	nucleus	30.87	32.32
TraesCS5A01G053800.1	Wheat	nucleus	29.9	32.29
TraesCS5D01G065300.1	Wheat	nucleus	29.78	32.16
TraesCS5B01G062400.1	Wheat	nucleus	29.42	31.76
Zm00001d018930_P003	Maize	nucleus	31.6	31.6
EES17353	Sorghum	nucleus	28.93	31.16
TraesCS4A01G284600.2	Wheat	nucleus	31.11	30.7
EER93767	Sorghum	nucleus	26.27	29.05
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	28.69	28.35
Zm00001d031009_P004	Maize	golgi, plasma membrane	28.09	27.88
HORVU4Hr1G004280.15	Barley	nucleus, plastid	30.99	27.74
Zm00001d033274_P005	Maize	nucleus	24.21	27.25
Bra001884.1-P	Field mustard	nucleus, plastid	38.62	26.08
CDX92957	Canola	nucleus, plastid	38.26	25.99
CDX94892	Canola	nucleus, plastid	38.26	25.46
PGSC0003DMT400059571	Potato	nucleus, plastid	23.49	21.77
PGSC0003DMT400000824	Potato	plastid	11.86	20.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400082098	EnsemblPlantsGene:PGSC0003DMG400032257	EntrezGene:102593409	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	ncoils:Coil	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634
PGSC:PGSC0003DMG400032257	RefSeq:XP_006360749.1	SEG:seg	SMART:SM01114	UniParc:UPI000294D5CA	UniProt:M1D5M1
MapMan:15.5.9	:	:	:	:	:

Description

Tso1 [Source:PGSC_GENE;Acc:PGSC0003DMG400032257]

Coordinates

chr9:+:54164531..54171345

Molecular Weight (calculated)

89587.7 Da

IEP (calculated)

5.463

GRAVY (calculated)

-0.655

Length

826 amino acids

Sequence
(BLAST)

001: MSKKEGEDEK VSLESENVEV KSEEVEVEGR KSEVNVKGEE GGGGGGVVVV MDTPERNKSQ IATPISKFEE SPFSNFLNNL SPIKPVKAAH FPQTLNTLSF
101: GSIPSVFTSP HVSSARESRF LRRHLLSDPS KPEFASDNSV KVDNDEAMPD AVNSSNEPKE SFGSQNSMVE ASNECSKLAV ERTLNYECND SPSTLPTGSF
201: RGKSLSEFAG SSVTYVPLVQ GMSGKGLLRC EVNTEGKNEL DPNKEAPGCD WENLICDATD LLIFDSPGDP EAFTKAAGPN LRHFGFASNE MQNMQVFGQA
301: STSECGGDGS ETEKPSTQPG DETQVNEYAE NQNMKPDSSL TNDGMGVGQS ERTDNEMVST LYRGMRRRCL VFEMVGSRRK HVDEGSGSSA VQDTDGNLAC
401: NEKQLVPYKA VNESSRCILP GIGLHLNALA ASSKDGKVVK HETNASGKQL LITSGSAVSL HPLVAGQESM SKSQPETSRE IVPFENSVPL MEDASLAPGY
501: VNNEELSQTS PKKKRRRLEP GEGEACKRCN CKKSKCLKLY CECFAAGVYC VEPCACQDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NADTISETGD
601: DSSKTPASAR HKRGCNCKKS GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGSIFIGT DGDAEEEETD AYEKSTVDRA FHKNLLHSDV ELNPDSTVPA
701: TPLAFRRPPM QLPFSLKNKP PRSSFLSIGS SSGIFAGQGV GRPDFFQPQP QPKFEKPFES IQEDEMPEIL QQGGTSSPIS GIKTASPNRK RVSPPHCDFA
801: NSPGRRSSRK LILQSIPSFP SLTPNP

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.