Factsheet for Bra023810.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67857	Canola	nucleus, plastid	98.82	96.85
CDY64240	Canola	cytosol, plastid	93.24	92.62
Bra033920.1-P	Field mustard	plastid	67.4	69.39
AT3G22760.1	Thale cress	nucleus	68.24	66.34
Os03t0638300-01	Rice	cytosol	10.64	55.75
Bra036900.1-P	Field mustard	nucleus, plastid	59.29	54.42
Bra023807.1-P	Field mustard	nucleus	12.84	40.64
Bra033919.1-P	Field mustard	nucleus	50.34	39.84
KRH77830	Soybean	nucleus	47.8	36.56
KRH27657	Soybean	nucleus	47.8	36.56
KRH35487	Soybean	nucleus	46.28	36.05
KRG91344	Soybean	nucleus	47.13	36.05
PGSC0003DMT400082098	Potato	nucleus	46.79	33.54
VIT_14s0030g01800.t01	Wine grape	nucleus	45.27	33.25
Solyc09g082500.2.1	Tomato	nucleus	46.28	33.05
Bra025590.1-P	Field mustard	cytosol	7.6	31.69
GSMUA_Achr9P10600_001	Banana	nucleus	39.19	31.44
GSMUA_Achr8P20460_001	Banana	nucleus	41.39	30.43
Bra001128.1-P	Field mustard	nucleus	26.35	29.94
GSMUA_Achr9P25670_001	Banana	nucleus	40.54	28.95
TraesCS5B01G062400.1	Wheat	nucleus	37.33	28.89
TraesCS5A01G053800.1	Wheat	nucleus	37.16	28.76
TraesCS5D01G065300.1	Wheat	nucleus	37.16	28.76
HORVU5Hr1G012950.1	Barley	nucleus	37.16	28.72
Os12t0605500-01	Rice	nucleus	36.15	28.16
OQU88523	Sorghum	nucleus	36.49	27.84
EES17353	Sorghum	nucleus	35.98	27.77
TraesCS4D01G026100.1	Wheat	nucleus	36.82	27.7
Os07t0176200-01	Rice	nucleus	35.98	27.24
TraesCS4B01G028500.1	Wheat	nucleus	35.98	27.0
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	36.66	25.96
TraesCS4A01G284600.2	Wheat	nucleus	36.66	25.93
EER93767	Sorghum	nucleus	32.26	25.57
Zm00001d031009_P004	Maize	golgi, plasma membrane	35.81	25.48
Zm00001d018930_P003	Maize	nucleus	35.3	25.3
Bra001884.1-P	Field mustard	nucleus, plastid	51.01	24.69
Zm00001d033274_P005	Maize	nucleus	29.73	23.98
Bra041164.1-P	Field mustard	nucleus	3.89	23.23
HORVU4Hr1G004280.15	Barley	nucleus, plastid	35.81	22.97
Bra036551.1-P	Field mustard	nucleus	16.05	20.83
Bra021165.1-P	Field mustard	nucleus	10.64	19.33
Bra041042.1-P	Field mustard	nucleus	16.22	19.09
Bra009859.1-P	Field mustard	nucleus	16.05	18.66
Bra011075.1-P	Field mustard	nucleus	15.54	17.42
Bra010348.1-P	Field mustard	nucleus	16.72	17.25
Bra024171.1-P	Field mustard	nucleus	15.03	16.12

Protein Annotations

EnsemblPlants:Bra023810.1	EnsemblPlants:Bra023810.1-P	EnsemblPlantsGene:Bra023810	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	SEG:seg
SMART:SM01114	UniParc:UPI0002544173	UniProt:M4E4V6	MapMan:15.5.9	:	:

Description

AT3G22760 (E=4e-181) SOL1 | SOL1; transcription factor

Coordinates

chrA01:-:20129933..20132787

Molecular Weight (calculated)

64905.0 Da

IEP (calculated)

6.555

GRAVY (calculated)

-0.651

Length

592 amino acids

Sequence
(BLAST)

001: MDTPQKTVTQ IETPVSKLKV ENSPVFNYIN SLSPITTVKS ISNAQTFSSL SFTSPPPVFT TPHVASHKGS RFRSHSNSSD PSNKVVEEAL PEKEPPQILN
101: NDCLTTTTPR VTNDGACEDG ETDLQKMCDD NVKRKSDTPD WETLISDSSD MLIYGSPNDS EAFRCFLQRS SDSKTRLCSG SKPALAPVSQ SNEPESSDAL
201: SVLHRGVRRR CLDFEMPRNN NQTPRCVVPS IGLHLNAIAM SSKDNNNVSK EYSFTGNVKV GLQSSTTTPV LPSDDIVREN ETREEAAGEE GLEEAPVSLA
301: LVESEQAGEG ESSCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCIDCFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRNS DSTIEVGEDA SKTPASARHK
401: RGCNCKKSNC LKKYCECYQS GVGCSINCRC EGCKNAFGRK DGSSFAGMDT EQDQENETSG KSGTTIPLPP STPMPLRQPL AQLPISSNNM LPSQQSQQHL
501: HGASLYNSQS FRKQDMGLMS QSRIETIAEE RAEDIENFIH SPVTNINALS PNSKRVSLPH MDSTETTPWR RNGGRKLLLS SIPTFPSLTP HH

Best Arabidopsis Sequence Match ( AT3G22760.1 )
(BLAST)

001: MDTPEKSETQ IGTPVSKLKV EDSPVFSYIC NLSPIKTIKP IPITCPLSSL NYASPPSVFT SPHAVSHKES RFRSQKDVSA SKEVGEEEAL VGSEPEQSYK
101: NDCNTPRVTN DVKDNGCGKD LQVMMDNVKK KSDTPDWETL IAATTELIYG SPRESEAFSC LLKKTSNSEA RLRGSITATS VAVTNTDVVN NESESVDALS
201: ILHRGVRRRC LDFEVKGNNQ QTLGESSSSC VVPSIGLHLN TIAMSSKDKN VANEYSFSGN IKVGVQSSLT PVLHSQHDIV RENESGKDSG QIIEVVPKSL
301: ASVDLTPISP KKKRRKSEQS GEGDSSCKRC NCKKSKCLKL YCECFAAGFY CIEPCSCINC FNKPIHKDVV LATRKQIESR NPLAFAPKVI RNSDSIIEVG
401: EDASKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSLFEQ DEENETSGTP GTKKTQQNVE LFKPAAPPST PIPFRQPLAQ
501: LPISSNNRLL PPQSHFHHGA IGSSSSGIYN IRKPDMSLLS HSRIETITED IDDMSENLIH SPITTLSPNS KRVSLSHLDS PESTPWRRNG GGRNLIRSFP
601: TFPSLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.