Factsheet for Bra041042.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041164.1-P	Field mustard	nucleus	19.68	100.0
CDY31991	Canola	nucleus	99.8	99.21
Bra025590.1-P	Field mustard	cytosol	19.88	70.42
AT2G20110.2	Thale cress	nucleus	72.56	63.15
Bra010348.1-P	Field mustard	nucleus	64.41	56.45
Bra011075.1-P	Field mustard	nucleus	59.05	56.25
Bra024171.1-P	Field mustard	nucleus	59.05	53.8
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	54.47	52.29
KRH39300	Soybean	nucleus	56.66	50.98
PGSC0003DMT400000824	Potato	plastid	49.11	50.61
KRH41552	Soybean	nucleus	55.27	50.45
KRH60264	Soybean	nucleus	56.26	50.45
KRH48373	Soybean	nucleus	56.06	50.18
Solyc12g007180.1.1	Tomato	nucleus	48.11	48.59
Bra036551.1-P	Field mustard	nucleus	33.2	36.62
Bra009859.1-P	Field mustard	nucleus	36.78	36.35
Bra021165.1-P	Field mustard	nucleus	19.48	30.06
Bra023807.1-P	Field mustard	nucleus	7.55	20.32
Bra023810.1-P	Field mustard	nucleus, plastid	19.09	16.22
Bra036900.1-P	Field mustard	nucleus, plastid	20.08	15.66
Bra033920.1-P	Field mustard	plastid	17.3	15.13
Bra001128.1-P	Field mustard	nucleus	14.31	13.82
Bra033919.1-P	Field mustard	nucleus	19.09	12.83
Bra001884.1-P	Field mustard	nucleus, plastid	19.88	8.18

Protein Annotations

EnsemblPlants:Bra041042.1	EnsemblPlants:Bra041042.1-P	EnsemblPlantsGene:Bra041042	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam
InterPro:Tesmin/TSO1-like_CXC	ncoils:Coil	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634
SEG:seg	SMART:SM01114	UniParc:UPI000253EC28	UniProt:M4FIW3	MapMan:15.5.9	:

Description

AT2G20110 (E=1e-159) | tesmin/TSO1-like CXC domain-containing protein

Coordinates

chrScaffold000410:+:7858..9837

Molecular Weight (calculated)

53980.2 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.639

Length

503 amino acids

Sequence
(BLAST)

001: MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP PLQSPQVPIR LPKPESPKPK PRPVVVEAGD GTPMKKKHCN CKHSRCLKLY
101: CECFASGTYC DGCNCLNCFN NVDNEPARRE AIESTLERNP NAFRPKIASS PHDPRDNREV VGGVVMLGKH HKGCHCKKSG CLKKYCECFQ ANILCSDNCR
201: CLGCKNFEGS EDRLALFHGE HSHGAAYLQH ANAAITGAVG SSGFASSPAP KRRKSQDIFF NQAAKDSSIN RLGQGSSGKT TSSKPVARHG GPSKVVYRSL
301: LADIIQPQDV KALCSVLVAV SEEAAKTSTV KRLEDQTETS LASSAQDNNN GTEIEKAASG NEAGADESNS DGSKGKSLSP ETLALMCDEQ DTMLMVAASS
401: NYSVEPPNGQ DQGYAEKEKI VLTKFRDCLN RIISYAELKE SKCSLSRMDT ESPVHAAVKT EPVVQQGEVA NGVSQTTIQQ PSQLTSSYTQ TQQPQAPSEK
501: KDL

Best Arabidopsis Sequence Match ( AT2G20110.3 )
(BLAST)

001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT HLHKTPALSE KKDL

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT2G20110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.