Factsheet for Bra041164.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041042.1-P	Field mustard	nucleus	100.0	19.68
Bra011075.1-P	Field mustard	nucleus	56.57	10.61
Bra010348.1-P	Field mustard	nucleus	56.57	9.76
Bra024171.1-P	Field mustard	nucleus	46.46	8.33
Bra036551.1-P	Field mustard	nucleus	31.31	6.8
Bra009859.1-P	Field mustard	nucleus	34.34	6.68
Bra021165.1-P	Field mustard	nucleus	13.13	3.99
TraesCS1D01G393200.1	Wheat	cytosol	7.07	3.89
Bra023810.1-P	Field mustard	nucleus, plastid	23.23	3.89
Bra001128.1-P	Field mustard	nucleus	20.2	3.84
Bra036900.1-P	Field mustard	nucleus, plastid	22.22	3.41
Bra033920.1-P	Field mustard	plastid	19.19	3.3
TraesCS3A01G219300.1	Wheat	nucleus	7.07	2.89
TraesCS3D01G233200.1	Wheat	nucleus	7.07	2.88
Bra033919.1-P	Field mustard	nucleus	21.21	2.81
TraesCS3B01G249700.1	Wheat	nucleus	7.07	2.68
TraesCS1B01G411800.1	Wheat	nucleus	7.07	2.67
TraesCS2D01G563300.1	Wheat	nucleus	7.07	2.65
Bra001884.1-P	Field mustard	nucleus, plastid	25.25	2.04
Bra023807.1-P	Field mustard	nucleus	1.01	0.53
Bra025590.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra041164.1	EnsemblPlants:Bra041164.1-P	EnsemblPlantsGene:Bra041164	InterPro:Lin-54_fam	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14
SEG:seg	UniParc:UPI000253EDB1	UniProt:M4FJ83	MapMan:35.2	:	:

Description

AT2G20110 (E=2e-006) | tesmin/TSO1-like CXC domain-containing protein

Coordinates

chrScaffold002700:+:110..494

Molecular Weight (calculated)

10549.6 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.804

Length

99 amino acids

Sequence
(BLAST)

1: MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP PLQSPQVPIR LPKPESPKPK PRPVVVEAGD GTPMKKKHCN CKHSRCLKL

Best Arabidopsis Sequence Match ( AT2G20110.3 )
(BLAST)

001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT HLHKTPALSE KKDL

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT2G20110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.