CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41552	Soybean	nucleus	90.91	92.56
KRH39300	Soybean	nucleus	81.64	81.93
KRH48373	Soybean	nucleus	80.57	80.43
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	62.92	67.37
PGSC0003DMT400000824	Potato	plastid	54.37	62.5
CDY71540	Canola	nucleus, plastid	29.23	61.89
Solyc12g007180.1.1	Tomato	nucleus	54.9	61.85
CDY67603	Canola	cytosol	30.84	60.28
CDY05722	Canola	nucleus	50.45	57.17
Bra041042.1-P	Field mustard	nucleus	50.45	56.26
CDY31991	Canola	nucleus	50.45	55.93
GSMUA_Achr9P06330_001	Banana	cytosol	46.88	51.98
CDY35239	Canola	nucleus	53.3	51.29
AT4G29000.1	Thale cress	nucleus	55.08	51.24
Bra011075.1-P	Field mustard	nucleus	47.42	50.38
CDX97461	Canola	nucleus	50.62	50.18
GSMUA_Achr2P09150_001	Banana	cytosol	46.35	49.81
AT2G20110.2	Thale cress	nucleus	50.8	49.31
GSMUA_Achr6P26760_001	Banana	nucleus	48.31	48.65
CDY66476	Canola	nucleus	49.55	48.52
Bra010348.1-P	Field mustard	nucleus	49.38	48.26
CDX92907	Canola	nucleus	47.95	48.21
Bra024171.1-P	Field mustard	nucleus	46.35	47.1
GSMUA_Achr3P31550_001	Banana	nucleus	45.81	43.93
Os01t0761100-01	Rice	cytosol, nucleus, plastid	47.77	43.3
KRH62039	Soybean	nucleus	44.56	42.73
TraesCS3A01G304800.1	Wheat	plastid	45.63	41.63
KRH52709	Soybean	nucleus	43.14	41.51
TraesCS3D01G297000.1	Wheat	plastid	45.45	41.46
TraesCS3B01G331700.1	Wheat	plastid	45.45	41.46
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	45.1	41.34
KXG33424	Sorghum	nucleus	44.03	40.29
Zm00001d012688_P001	Maize	nucleus	43.49	39.74
Zm00001d043378_P001	Maize	nucleus	42.25	38.79
KRH00620	Soybean	cytosol	5.35	27.78
CDY06853	Canola	cytosol, nucleus, plastid	52.76	21.02
KRH77830	Soybean	nucleus	18.18	13.18
KRH27657	Soybean	nucleus	17.65	12.79
KRH35487	Soybean	nucleus	16.58	12.24
KRG91344	Soybean	nucleus	16.4	11.89
KRH39836	Soybean	nucleus, plastid	16.58	10.62
KRH05122	Soybean	nucleus, plastid	16.4	10.18

Protein Annotations

EMBL:ACUP02003357	EnsemblPlants:KRH60264	EnsemblPlantsGene:GLYMA_05G229900	EntrezGene:100786353	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	ncoils:Coil	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638
PFscan:PS51634	ProteinID:KRH60264	ProteinID:KRH60264.1	SEG:seg	SMART:SM01114	UniParc:UPI0002339536
UniProt:A0A0R0K5H4	MapMan:15.5.9	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:40792469..40798927

Molecular Weight (calculated)

60373.0 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.589

Length

561 amino acids

Sequence
(BLAST)

001: MGEGEAEGSD GAPKNIVSND VVANALLPFD VPAKKLARQL DFTDFGGMPA PPQPPVILPL PPSASVRVGK PESPKSRPRP GFEIKEATPK KQKQCNCKHS
101: KCLKLYCECF ASGIYCDGCN CVNCYNNVEN EAARREAVEA TLERNPNAFR PKIASSPHGT RDSREDAGEV LILGKHNKGC HCKKSGCLKK YCECFQANIL
201: CSENCKCMDC KNFEGSEERQ ALFHGDQNNN MVYIQQAANA AITGAIGSSG YSSPPISKKR KGQELLFGPT VKDPSVGRQG QQANNVRVPA PSSSLSPIPG
301: ARVGPATLGP SKLMYRSLLA DIIQPQHLKE LCSVLVLVSG QAAKMFTDHK NFMDKHAEDQ TETSRASSTQ EQLPSQKEAN VEKAMADDDC SSANQTDNIS
401: PDNSCSDGAD VPKGRPMSPG TLALMCDEQD TMFMTAASTV GSRAHACNTS LQPPYGQVMT EVYAEQERIV LTKFRDFLNR VITMGEINET KCSSLARSEL
501: ESQKDPNINC TGNASTETQH QQGATNNGVA KTAGNSSNST SLFPGGSLVS ENGETYPKVE E

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.