Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P06330_001 | Banana | cytosol | 67.68 | 74.51 |
| GSMUA_Achr2P09150_001 | Banana | cytosol | 66.25 | 70.69 |
| Bra025590.1-P | Field mustard | cytosol | 15.26 | 59.86 |
| CDY44573 | Canola | cytosol | 15.26 | 59.86 |
| VIT_11s0016g03680.t01 | Wine grape | nucleus, plastid | 48.29 | 51.34 |
| GSMUA_Achr3P31550_001 | Banana | nucleus | 53.32 | 50.77 |
| KRH41552 | Soybean | nucleus | 49.01 | 49.55 |
| PGSC0003DMT400000824 | Potato | plastid | 43.09 | 49.18 |
| KRH60264 | Soybean | nucleus | 48.65 | 48.31 |
| KRH39300 | Soybean | nucleus | 48.29 | 48.12 |
| KRH48373 | Soybean | nucleus | 48.29 | 47.86 |
| Solyc12g007180.1.1 | Tomato | nucleus | 42.73 | 47.79 |
| Os01t0761100-01 | Rice | cytosol, nucleus, plastid | 50.99 | 45.88 |
| Zm00001d012688_P001 | Maize | nucleus | 47.94 | 43.49 |
| TraesCS3D01G297000.1 | Wheat | plastid | 47.94 | 43.41 |
| KXG33424 | Sorghum | nucleus | 47.76 | 43.39 |
| HORVU3Hr1G073470.1 | Barley | cytosol, nucleus, plastid | 47.58 | 43.3 |
| TraesCS3B01G331700.1 | Wheat | plastid | 47.76 | 43.25 |
| Zm00001d043378_P001 | Maize | nucleus | 47.22 | 43.04 |
| TraesCS3A01G304800.1 | Wheat | plastid | 47.4 | 42.93 |
| AT4G29000.1 | Thale cress | nucleus | 44.7 | 41.29 |
| AT2G20110.2 | Thale cress | nucleus | 41.11 | 39.62 |
| GSMUA_Achr2P17070_001 | Banana | nucleus | 16.88 | 15.09 |
| GSMUA_Achr9P10600_001 | Banana | nucleus | 16.88 | 12.74 |
| GSMUA_Achr9P25670_001 | Banana | nucleus | 17.77 | 11.94 |
| GSMUA_Achr8P20460_001 | Banana | nucleus | 16.88 | 11.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P26760_001 | EnsemblPlants:GSMUA_Achr6T26760_001 | EnsemblPlantsGene:GSMUA_Achr6G26760_001 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam |
| InterPro:Tesmin/TSO1-like_CXC | ncoils:Coil | PANTHER:PTHR12446 | PANTHER:PTHR12446:SF14 | PFAM:PF03638 | PFscan:PS51634 |
| SEG:seg | SMART:SM01114 | UniParc:UPI00029551A8 | UniProt:M0TAH1 | MapMan:15.5.9 | : |
Description
Putative tesmin/TSO1-like CXC domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G26760_001]
Coordinates
chr6:+:27436059..27444001
Molecular Weight (calculated)
60621.7 Da
IEP (calculated)
8.017
GRAVY (calculated)
-0.527
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSVQPVSS ASSDFPPRKL VRHLDFTAVA YGGVSPSNAL SIALDSPQQL QPPPRATPAS LSLSRPSIPS ITAGLIVNLF SKPESPKSRP RLLSDAKDGT
101: PARKKNCNCK HSKCLKLYCE CFASGVYCDG CNCTNCCNNV ENEAARHEAV EATLERNPNA FRPKIGSSPH ASRVTRDEAG ELPLVGKHNK GCHCKKSGCL
201: KKYCECFQAN ILCSDNCKCM DCKNFEGSEE RKALFRGDHG STLYMQQTAS ATVNGAIGPS GFMSPSPSKK RKNQELLFGA LVKEPIKRLA QLPQAKTSAP
301: SSFSASVPAA SAINTAPVVS TKVTYRSLLA DIVQPEHIRD LCKLLAVVSG KVAKTFADRK AQKLTEKEGQ SERSPIQSND DIDQTWHDLD MKKAPADEFS
401: SEIPVEKANT EESGSDCRDG QKGGRPTSPG TLALLCDEQD TIFMPSQATD TVSKSFSNQS ITEVYVEQER CVLMEFRDYL LKLVTYGQMK EEKYSSRSAE
501: HEKPCHLESA INGVATTVVP VAMETPQIAA YSSKYYRVGQ QNIGNGDIKP NTEKSEV
101: PARKKNCNCK HSKCLKLYCE CFASGVYCDG CNCTNCCNNV ENEAARHEAV EATLERNPNA FRPKIGSSPH ASRVTRDEAG ELPLVGKHNK GCHCKKSGCL
201: KKYCECFQAN ILCSDNCKCM DCKNFEGSEE RKALFRGDHG STLYMQQTAS ATVNGAIGPS GFMSPSPSKK RKNQELLFGA LVKEPIKRLA QLPQAKTSAP
301: SSFSASVPAA SAINTAPVVS TKVTYRSLLA DIVQPEHIRD LCKLLAVVSG KVAKTFADRK AQKLTEKEGQ SERSPIQSND DIDQTWHDLD MKKAPADEFS
401: SEIPVEKANT EESGSDCRDG QKGGRPTSPG TLALLCDEQD TIFMPSQATD TVSKSFSNQS ITEVYVEQER CVLMEFRDYL LKLVTYGQMK EEKYSSRSAE
501: HEKPCHLESA INGVATTVVP VAMETPQIAA YSSKYYRVGQ QNIGNGDIKP NTEKSEV
001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP
Arabidopsis Description
TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.