CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48373	Soybean	nucleus	95.17	94.66
KRH60264	Soybean	nucleus	81.93	81.64
KRH41552	Soybean	nucleus	78.89	80.04
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	64.58	68.89
PGSC0003DMT400000824	Potato	plastid	55.64	63.73
Solyc12g007180.1.1	Tomato	nucleus	56.17	63.05
CDY71540	Canola	nucleus, plastid	29.87	63.02
CDY67603	Canola	cytosol	31.84	62.02
CDY05722	Canola	nucleus	50.98	57.58
Bra041042.1-P	Field mustard	nucleus	50.98	56.66
CDY31991	Canola	nucleus	50.98	56.32
CDY35239	Canola	nucleus	55.81	53.52
GSMUA_Achr9P06330_001	Banana	cytosol	47.59	52.57
Bra011075.1-P	Field mustard	nucleus	49.55	52.46
AT4G29000.1	Thale cress	nucleus	56.35	52.24
CDX97461	Canola	nucleus	52.59	51.94
CDY66476	Canola	nucleus	52.06	50.79
Bra010348.1-P	Field mustard	nucleus	51.88	50.52
AT2G20110.2	Thale cress	nucleus	52.24	50.52
CDX92907	Canola	nucleus	49.73	49.82
GSMUA_Achr2P09150_001	Banana	cytosol	46.15	49.43
Bra024171.1-P	Field mustard	nucleus	48.12	48.73
GSMUA_Achr6P26760_001	Banana	nucleus	48.12	48.29
GSMUA_Achr3P31550_001	Banana	nucleus	45.62	43.59
Os01t0761100-01	Rice	cytosol, nucleus, plastid	47.94	43.3
KRH62039	Soybean	nucleus	44.54	42.56
TraesCS3B01G331700.1	Wheat	plastid	45.98	41.79
TraesCS3A01G304800.1	Wheat	plastid	45.98	41.79
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	45.62	41.67
TraesCS3D01G297000.1	Wheat	plastid	45.8	41.63
KRH52709	Soybean	nucleus	43.11	41.34
KXG33424	Sorghum	nucleus	44.72	40.78
Zm00001d012688_P001	Maize	nucleus	44.01	40.07
Zm00001d043378_P001	Maize	nucleus	43.11	39.44
KRH00620	Soybean	cytosol	5.19	26.85
CDY06853	Canola	cytosol, nucleus, plastid	55.64	22.09
KRH77830	Soybean	nucleus	18.43	13.31
KRH35487	Soybean	nucleus	17.71	13.03
KRH27657	Soybean	nucleus	17.89	12.92
KRG91344	Soybean	nucleus	17.53	12.66
KRH39836	Soybean	nucleus, plastid	16.99	10.84
KRH05122	Soybean	nucleus, plastid	17.17	10.62

Protein Annotations

EMBL:ACUP02005930	EnsemblPlants:KRH39300	EnsemblPlantsGene:GLYMA_09G191600	EntrezGene:100777698	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634
ProteinID:KRH39300	ProteinID:KRH39300.1	SEG:seg	SMART:SM01114	UniParc:UPI000233915D	UniProt:K7LET3
MapMan:15.5.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:41632053..41640614

Molecular Weight (calculated)

60364.4 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.549

Length

559 amino acids

Sequence
(BLAST)

001: MGEGGEGEGD CAPKNASLSE VVAPAKKLAR QLDFTGAPEH PQLSQPPQLP VAVLPLQPQA PHARVGKPES PKSRSRPNFE IKDATPKKQK QCNCKHSKCL
101: KLYCECFASG IYCDGCNCVN CFNNVENEAA RREAVEATLE RNPNAFRPKI ASSPHGTRDS REEAGEVLIL GKHNKGCHCK KSGCLKKYCE CFQANILCSE
201: NCKCMDCKNF EGSEERQALF HGDQNNNMAY IQQAANAAIT GAIGSSGYSS PPVSKKRKGQ ELFFWPTTKD PSISKLGQQV NHVRGPAPSS SLSPVSGARV
301: GTATLGPSKF MYRSLLADII QPQHLKELCS VLVLVSGQAA KTLTDQKILM EKQAEDQTET SLASSSQEQL PSQKEGRVEK TVADDCSSAN QTDKISPDNS
401: SSDGADVPKG RPMSPGTLAL MCDEQDTMFM TAASPIAPMA HACNTSSQFP YGQEMTEVYA EQERIVLTKF RDFLNRVITM GEINETKCSS LARNELESQK
501: DPIINGIGNT SSEIVLQHGT TSNGVTKPAV SPLATTSTSM IPGNIAENGE TKVKIEKEI

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.