Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05722 | Canola | nucleus | 63.32 | 73.94 |
| Bra041042.1-P | Field mustard | nucleus | 63.15 | 72.56 |
| CDY31991 | Canola | nucleus | 63.49 | 72.53 |
| AT4G29000.1 | Thale cress | nucleus | 60.21 | 57.71 |
| VIT_11s0016g03680.t01 | Wine grape | nucleus, plastid | 48.62 | 53.63 |
| PGSC0003DMT400000824 | Potato | plastid | 44.81 | 53.07 |
| KRH39300 | Soybean | nucleus | 50.52 | 52.24 |
| KRH48373 | Soybean | nucleus | 50.17 | 51.6 |
| Solyc12g007180.1.1 | Tomato | nucleus | 44.12 | 51.2 |
| KRH41552 | Soybean | nucleus | 48.79 | 51.18 |
| KRH60264 | Soybean | nucleus | 49.31 | 50.8 |
| GSMUA_Achr9P06330_001 | Banana | cytosol | 38.58 | 44.07 |
| GSMUA_Achr2P09150_001 | Banana | cytosol | 38.41 | 42.53 |
| GSMUA_Achr6P26760_001 | Banana | nucleus | 39.62 | 41.11 |
| GSMUA_Achr3P31550_001 | Banana | nucleus | 40.66 | 40.17 |
| Os01t0761100-01 | Rice | cytosol, nucleus, plastid | 41.35 | 38.61 |
| KXG33424 | Sorghum | nucleus | 40.31 | 38.01 |
| HORVU3Hr1G073470.1 | Barley | cytosol, nucleus, plastid | 39.97 | 37.75 |
| Zm00001d012688_P001 | Maize | nucleus | 39.97 | 37.62 |
| TraesCS3A01G304800.1 | Wheat | plastid | 39.79 | 37.4 |
| TraesCS3B01G331700.1 | Wheat | plastid | 39.79 | 37.4 |
| TraesCS3D01G297000.1 | Wheat | plastid | 39.62 | 37.24 |
| Zm00001d043378_P001 | Maize | nucleus | 38.93 | 36.82 |
| AT5G25790.2 | Thale cress | nucleus | 28.37 | 32.54 |
| AT3G16160.1 | Thale cress | nucleus | 19.2 | 30.16 |
| AT4G14770.1 | Thale cress | nucleus | 17.47 | 14.99 |
| AT3G22760.1 | Thale cress | nucleus | 15.57 | 14.78 |
| AT3G22780.1 | Thale cress | nucleus | 15.74 | 13.09 |
| AT3G04850.1 | Thale cress | cytosol | 13.15 | 11.89 |
Protein Annotations
| MapMan:15.5.9 | EntrezGene:816530 | ProteinID:AEC06966.1 | ArrayExpress:AT2G20110 | EnsemblPlantsGene:AT2G20110 | RefSeq:AT2G20110 |
| TAIR:AT2G20110 | RefSeq:AT2G20110-TAIR-G | EnsemblPlants:AT2G20110.2 | TAIR:AT2G20110.2 | InterPro:CRC | InterPro:IPR005172 |
| InterPro:Lin-54_fam | RefSeq:NP_849995.1 | PFAM:PF03638 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51634 | PANTHER:PTHR12446 |
| PANTHER:PTHR12446:SF14 | SMART:SM01114 | InterPro:Tesmin/TSO1-like_CXC | UniParc:UPI0000196BC3 | SEG:seg | : |
Description
Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT2G20110]
Coordinates
chr2:+:8684117..8687218
Molecular Weight (calculated)
62096.1 Da
IEP (calculated)
8.166
GRAVY (calculated)
-0.593
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKVFCLF VAESNCSMSR MDLDTPVQTT
501: VRIDPVVQQA PVANGVSQTA KQPSQLNTTT PNTSSQTANG VSQTAKQPSQ LTTTTTTPNT SSQTHLHKTP ALSEKKDL
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKVFCLF VAESNCSMSR MDLDTPVQTT
501: VRIDPVVQQA PVANGVSQTA KQPSQLNTTT PNTSSQTANG VSQTAKQPSQ LTTTTTTPNT SSQTHLHKTP ALSEKKDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.