Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31991 | Canola | nucleus | 96.16 | 94.07 |
| CDY44573 | Canola | cytosol | 20.2 | 70.42 |
| CDY71540 | Canola | nucleus, plastid | 34.55 | 64.53 |
| AT2G20110.2 | Thale cress | nucleus | 73.94 | 63.32 |
| CDY67603 | Canola | cytosol | 36.36 | 62.72 |
| CDY35239 | Canola | nucleus | 66.67 | 56.6 |
| CDX97461 | Canola | nucleus | 64.24 | 56.18 |
| CDY66476 | Canola | nucleus | 64.44 | 55.67 |
| CDX92907 | Canola | nucleus | 61.21 | 54.3 |
| VIT_11s0016g03680.t01 | Wine grape | nucleus, plastid | 54.95 | 51.91 |
| KRH39300 | Soybean | nucleus | 57.58 | 50.98 |
| KRH60264 | Soybean | nucleus | 57.17 | 50.45 |
| KRH41552 | Soybean | nucleus | 55.96 | 50.27 |
| KRH48373 | Soybean | nucleus | 56.97 | 50.18 |
| PGSC0003DMT400000824 | Potato | plastid | 49.29 | 50.0 |
| Solyc12g007180.1.1 | Tomato | nucleus | 48.48 | 48.19 |
| CDY19795 | Canola | nucleus | 33.33 | 36.26 |
| CDY65712 | Canola | nucleus | 33.33 | 36.03 |
| CDX88196 | Canola | nucleus | 36.77 | 35.69 |
| CDX80536 | Canola | nucleus | 36.36 | 34.68 |
| CDY28377 | Canola | nucleus | 20.61 | 31.1 |
| CDY05340 | Canola | nucleus | 29.9 | 30.96 |
| CDY20184 | Canola | cytosol | 20.81 | 30.29 |
| CDY34235 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.55 | 25.17 |
| CDY06853 | Canola | cytosol, nucleus, plastid | 66.67 | 23.44 |
| CDY64242 | Canola | nucleus | 10.51 | 19.7 |
| CDX79489 | Canola | cytosol | 11.31 | 17.34 |
| CDY67857 | Canola | nucleus, plastid | 20.0 | 16.39 |
| CDY64240 | Canola | cytosol, plastid | 19.6 | 16.28 |
| CDY54822 | Canola | cytosol, plastid | 17.98 | 16.21 |
| CDY10668 | Canola | nucleus, plastid | 18.18 | 15.68 |
| CDY29770 | Canola | nucleus, plastid | 20.2 | 15.46 |
| CDY42785 | Canola | nucleus, plastid | 20.2 | 15.22 |
| CDY54821 | Canola | nucleus | 20.0 | 14.58 |
| CDX74164 | Canola | nucleus | 14.55 | 13.79 |
| CDY40681 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 14.34 | 13.08 |
| CDY10669 | Canola | nucleus | 19.39 | 12.83 |
| CDX94892 | Canola | nucleus, plastid | 20.0 | 7.98 |
| CDX92957 | Canola | nucleus, plastid | 19.6 | 7.98 |
Protein Annotations
| EnsemblPlants:CDY05722 | EnsemblPlantsGene:GSBRNA2T00120755001 | InterPro:CRC | InterPro:IPR005172 | InterPro:Lin-54_fam | InterPro:Tesmin/TSO1-like_CXC |
| PANTHER:PTHR12446 | PANTHER:PTHR12446:SF14 | PFAM:PF03638 | PFscan:PS51634 | ProteinID:CDY05722 | ProteinID:CDY05722.1 |
| SEG:seg | SMART:SM01114 | UniParc:UPI0004EDFBE4 | MapMan:15.5.9 | : | : |
Description
BnaC07g00810D
Coordinates
chrLK031964:+:237318..239730
Molecular Weight (calculated)
53426.7 Da
IEP (calculated)
7.500
GRAVY (calculated)
-0.623
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGDEFPPK TEEFDAPTKK TARQLDFAGG HSQANQAPAT VAVPIPPLQS QLPIRLPKPE SPKPKPRPVV EATTPLKKKH CNCKHSRCLK LYCECFASGT
101: YCDGCNCLNC FNNVDNEPAR REAIESTLER NPNAFRPKIA SSPHDPRDNR EVVGGVVMLG KHHKGCHCKK SGCLKKYCEC FQANILCSDN CRCLGCKNFE
201: GSEDRLALFH GEHSHGAAYL QHANAAITGA VGSSGFASSP APKRRKAQDI FFNQAAKDSS INRLGQVSSG KTTSSKPVSR HGGPSKVVYR SLLADIIQPQ
301: DVKALCSVLV AVSEEAAKTS TEKRLENQTE TSLASSAQDN NNGTEVEKAV SGNEAGADES NSDGSKGKSL SPETLALMCD EQDTMLMVAA SSNCSVEPPN
401: GQDQGYAEQE KIVLTKFRDC LNRIISYAEL KESKCSLSRM DTESPVHAAV KVEQVVQQGA VTNGVPQTTI QEPSQLTSSY TQTQQPQAPS EKKDL
101: YCDGCNCLNC FNNVDNEPAR REAIESTLER NPNAFRPKIA SSPHDPRDNR EVVGGVVMLG KHHKGCHCKK SGCLKKYCEC FQANILCSDN CRCLGCKNFE
201: GSEDRLALFH GEHSHGAAYL QHANAAITGA VGSSGFASSP APKRRKAQDI FFNQAAKDSS INRLGQVSSG KTTSSKPVSR HGGPSKVVYR SLLADIIQPQ
301: DVKALCSVLV AVSEEAAKTS TEKRLENQTE TSLASSAQDN NNGTEVEKAV SGNEAGADES NSDGSKGKSL SPETLALMCD EQDTMLMVAA SSNCSVEPPN
401: GQDQGYAEQE KIVLTKFRDC LNRIISYAEL KESKCSLSRM DTESPVHAAV KVEQVVQQGA VTNGVPQTTI QEPSQLTSSY TQTQQPQAPS EKKDL
001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT HLHKTPALSE KKDL
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT HLHKTPALSE KKDL
Arabidopsis Description
Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT2G20110]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.