CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001884.1-P	Field mustard	nucleus, plastid	95.15	94.6
CDX94892	Canola	nucleus, plastid	87.34	85.58
CDY54821	Canola	nucleus	39.8	71.28
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	16.28	69.23
AT3G22780.1	Thale cress	nucleus	38.65	67.63
CDY10669	Canola	nucleus	39.56	64.3
CDY64242	Canola	nucleus	12.5	57.58
CDY29770	Canola	nucleus, plastid	27.8	52.24
Os03t0638300-01	Rice	cytosol	4.85	52.21
CDY67857	Canola	nucleus, plastid	25.66	51.66
CDY42785	Canola	nucleus, plastid	27.8	51.45
CDY64240	Canola	cytosol, plastid	24.84	50.67
CDY10668	Canola	nucleus, plastid	23.77	50.35
CDY54822	Canola	cytosol, plastid	22.7	50.27
Solyc09g082500.2.1	Tomato	nucleus	26.15	38.36
PGSC0003DMT400082098	Potato	nucleus	25.99	38.26
KRH77830	Soybean	nucleus	23.77	37.34
KRH27657	Soybean	nucleus	23.44	36.82
KRH35487	Soybean	nucleus	22.78	36.45
KRG91344	Soybean	nucleus	23.11	36.3
VIT_14s0030g01800.t01	Wine grape	nucleus	22.78	34.37
GSMUA_Achr9P10600_001	Banana	nucleus	20.23	33.33
CDY44573	Canola	cytosol	3.78	32.39
GSMUA_Achr8P20460_001	Banana	nucleus	21.13	31.93
CDX79489	Canola	cytosol	8.22	30.96
GSMUA_Achr9P25670_001	Banana	nucleus	20.97	30.76
TraesCS4D01G026100.1	Wheat	nucleus	19.33	29.86
TraesCS5D01G065300.1	Wheat	nucleus	18.75	29.8
HORVU5Hr1G012950.1	Barley	nucleus	18.75	29.77
TraesCS5B01G062400.1	Wheat	nucleus	18.67	29.67
TraesCS5A01G053800.1	Wheat	nucleus	18.59	29.54
CDX74164	Canola	nucleus	12.66	29.5
Os12t0605500-01	Rice	nucleus	18.34	29.34
Os07t0176200-01	Rice	nucleus	18.83	29.28
OQU88523	Sorghum	nucleus	18.5	28.99
TraesCS4B01G028500.1	Wheat	nucleus	18.75	28.9
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	12.83	28.73
EES17353	Sorghum	nucleus	17.85	28.29
CDY71540	Canola	nucleus, plastid	6.09	27.92
TraesCS4A01G284600.2	Wheat	nucleus	19.16	27.84
Zm00001d018930_P003	Maize	nucleus	18.26	26.88
CDY67603	Canola	cytosol	6.33	26.83
Zm00001d031009_P004	Maize	golgi, plasma membrane	17.93	26.2
EER93767	Sorghum	nucleus	16.04	26.1
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	17.76	25.84
HORVU4Hr1G004280.15	Barley	nucleus, plastid	19.0	25.03
Zm00001d033274_P005	Maize	nucleus	14.97	24.8
CDY28377	Canola	nucleus	5.76	21.34
CDY20184	Canola	cytosol	5.92	21.18
CDY19795	Canola	nucleus	7.65	20.44
CDX88196	Canola	nucleus	8.47	20.2
CDX80536	Canola	nucleus	8.39	19.65
CDY05722	Canola	nucleus	7.98	19.6
CDY31991	Canola	nucleus	7.98	19.17
CDY65712	Canola	nucleus	6.99	18.56
CDY05340	Canola	nucleus	7.24	18.41
CDX97461	Canola	nucleus	8.47	18.2
CDX92907	Canola	nucleus	8.14	17.74
CDY66476	Canola	nucleus	8.31	17.63
CDY35239	Canola	nucleus	8.14	16.98
CDY06853	Canola	cytosol, nucleus, plastid	11.92	10.3

Protein Annotations

EnsemblPlants:CDX92957	EnsemblPlantsGene:GSBRNA2T00154828001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:CDX92957	ProteinID:CDX92957.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EE8263	MapMan:15.5.9	:	:

Description

BnaA03g36790D

Coordinates

chrLK031874:+:260383..270249

Molecular Weight (calculated)

133803.0 Da

IEP (calculated)

7.621

GRAVY (calculated)

-0.657

Length

1216 amino acids

Sequence
(BLAST)

0001: MQNSPVFNYI NNLSPIKPVR SIPIAQTFGS LSPSVYTPPH KGSRFKSHTY FSDPAKELVE EALLETVPPK ILKNNCISTP PRRAAANDGS CGNGKTDLQK
0101: MCDGNVKRKS DTPDWETQFP DTPEMLIYDT LNDSEADRCF LPASSDLKRR SCGGTKPRLE PVSNSKELAD ALHRGVRRRL LDFEMPDNQT SEKSSSSCVV
0201: PPSTGLHLNT AFAMSSKDTN EYSLSANIKV GLQNSTPPVL HSHDILRENE TGEAAGQSVV EEIQKSSLAL VEMNQSSPKK KRLKSDQAGE GESSCKRCHC
0301: KKSKCLKLYC ECFASGVYCI VSCSCVDCFN KPIHEDTVLA TRKQIESRNP IAFAPKVIRN TDSSIMEAGV DASKTPASVR HKRGCNCKKS NCVKKYCECY
0401: QSGVGCSINC RCEGCKNAFG KKDVSSFVGM DIKQDGESKT GQTQQNNELF SYVPLPPSTP MSLRQPLAQL PISSNNMLLP QQSQQLHGAS GSFLYENQSF
0501: RKQGMGLLSR TETITEDIEN VIPSPITNIN TVSPNSKRVS LPHLDPPVLT PRRRNAAWKM DNKMKNQSSA SQIETPTPKS KFEDSPVFNF INNLSPFEPV
0601: KSFSSVQTFS SLSFTSPPPV FTSPHPTFHR ESRFFRCQNS VDRSKALESV SKEVDLNKDA TLEDEEEDTE TSCELPQILN SDSQSPPHHG EDIVTQVLLP
0701: PSDPTPGGGN DSSSGDVKLR LQEILDAQEE SGTPGSRRLM ADAAELLVFR SPNDSEAFTC LVDKISSSER RFFAGVKLPT QQHDNEPLAA VPNQPISNMH
0801: RGSMRRRCLD FEVPGKRKKD DDQQTVSDNN KAESSSSTCV VPGIGLHLNA IAMASRNTKI SITHEYSSSG EIQITPVPSQ DTVPEALEQA ESQPREASAV
0901: EEAPKALVLE ELIPDSLQKT KQVLEGGEGE SSCKRCNCKK SKCLKLYCEC FAAGVYCIDP CSCVDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRNSD
1001: SIMDTSDDAS KTPASARHKR GCNCKKSNCL KKYCECYQSG VGCSINCRCE GCKNAFGRKD AYLHAIMESK QEEDHETYEK RTADMSKEAE RNPSSEQPLT
1101: PLPPYKHLVV HQPFLPRNKL PPTQFSLGAG SSSFRKPEGE SGNEKKPLET VIEDKTEIMP DILNTSPIKA NSPNSKRVSP AHIGSSEPGS ILGKRSNGRK
1201: LILRSIPAFP SLNHNQ

Best Arabidopsis Sequence Match ( AT3G22780.1 )
(BLAST)

001: MDKSQKNPTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF TSPHVISHRE SRFFRCHNSV DRSKHLESLD GSAVKGEVVV
101: PLVEDLNKEA SLEDEEETSV ETSSELPQIM KFDSQTSEHS DSPCTEDVVI EASSDPPRGD NGSSSEDVTM GLQNMLVVRE GNDTPGCGRL ISDATELLVF
201: RSPNDSEAFR CLVDKISSSE RRFCAGVKST KRPDINKDIP ANGSSNENQP LAVLPTNESV FNLHRGGMRR RCLDFEMPGK RKKDIVDDQQ SVCDNNVAGE
301: SSSSCVVPGI GLHLNAVAMS AKDSNISVIH GYSISGEIQK SFSGSTTPIQ SQDTVQETSD QAENEPVEEV PKALVFPELN LGSLKKKMRK SEQAGEGESC
401: KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIRNADSIM EASDDASKTP ASARHKRGCN CKKSNCMKKY
501: CECYQGGVGC SMNCRCEGCT NVFGRKDGSL LVIMESKLEE NQETYEKRIA KIQHNVEVSK EVEQNPSSDQ PSTPLPPYRH LVVHQPFLSK NRLPPTQFFL
601: GTGSSSFRKP NSDLAQSQNE KKPLETVTED KTEIMPEILL NSPIANIKAI SPNSKRVSPP QPGSSESGSI LRRRGNGRKL ILRSIPAFPS LNPNQ

Arabidopsis Description

TSO1CRC domain-containing protein TSO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.