CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023810.1-P	Field mustard	nucleus, plastid	96.85	98.82
CDY64240	Canola	cytosol, plastid	93.54	94.8
CDY10668	Canola	nucleus, plastid	70.7	74.39
CDY54822	Canola	cytosol, plastid	67.38	74.13
AT3G22760.1	Thale cress	nucleus	68.54	67.98
Os03t0638300-01	Rice	cytosol	10.76	57.52
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	27.15	57.34
CDY29770	Canola	nucleus, plastid	59.27	55.33
CDY42785	Canola	nucleus, plastid	59.27	54.49
CDY54821	Canola	nucleus	51.99	46.24
CDY10669	Canola	nucleus	50.33	40.64
CDY64242	Canola	nucleus	17.72	40.53
KRH77830	Soybean	nucleus	48.34	37.73
KRH27657	Soybean	nucleus	47.85	37.34
KRH35487	Soybean	nucleus	46.69	37.11
KRG91344	Soybean	nucleus	47.35	36.95
PGSC0003DMT400082098	Potato	nucleus	47.35	34.62
Solyc09g082500.2.1	Tomato	nucleus	46.85	34.14
VIT_14s0030g01800.t01	Wine grape	nucleus	45.53	34.12
GSMUA_Achr9P10600_001	Banana	nucleus	39.9	32.66
CDY44573	Canola	cytosol	7.45	31.69
GSMUA_Achr8P20460_001	Banana	nucleus	42.05	31.55
CDX79489	Canola	cytosol	16.56	30.96
CDX74164	Canola	nucleus	26.16	30.27
CDY71540	Canola	nucleus, plastid	13.24	30.19
GSMUA_Achr9P25670_001	Banana	nucleus	41.39	30.16
TraesCS5B01G062400.1	Wheat	nucleus	37.58	29.67
TraesCS5A01G053800.1	Wheat	nucleus	37.42	29.54
TraesCS5D01G065300.1	Wheat	nucleus	37.42	29.54
HORVU5Hr1G012950.1	Barley	nucleus	37.42	29.5
Os12t0605500-01	Rice	nucleus	36.59	29.08
OQU88523	Sorghum	nucleus	37.09	28.87
TraesCS4D01G026100.1	Wheat	nucleus	37.58	28.84
EES17353	Sorghum	nucleus	36.59	28.81
Os07t0176200-01	Rice	nucleus	36.76	28.39
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	25.5	28.36
CDY67603	Canola	cytosol	13.41	28.22
TraesCS4B01G028500.1	Wheat	nucleus	36.76	28.14
TraesCS4A01G284600.2	Wheat	nucleus	37.42	27.0
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	37.09	26.79
Zm00001d031009_P004	Maize	golgi, plasma membrane	36.26	26.32
Zm00001d018930_P003	Maize	nucleus	35.93	26.27
EER93767	Sorghum	nucleus	32.45	26.24
CDX92957	Canola	nucleus, plastid	51.66	25.66
CDX94892	Canola	nucleus, plastid	51.66	25.14
Zm00001d033274_P005	Maize	nucleus	29.97	24.66
HORVU4Hr1G004280.15	Barley	nucleus, plastid	36.59	23.94
CDY19795	Canola	nucleus	16.23	21.54
CDY05722	Canola	nucleus	16.39	20.0
CDY20184	Canola	cytosol	11.09	19.71
CDY65712	Canola	nucleus	14.9	19.65
CDY28377	Canola	nucleus	10.6	19.51
CDY31991	Canola	nucleus	16.23	19.37
CDX88196	Canola	nucleus	16.23	19.22
CDY05340	Canola	nucleus	15.07	19.04
CDX80536	Canola	nucleus	16.23	18.88
CDX97461	Canola	nucleus	16.72	17.84
CDY66476	Canola	nucleus	16.72	17.63
CDY35239	Canola	nucleus	16.23	16.81
CDX92907	Canola	nucleus	15.23	16.49
CDY06853	Canola	cytosol, nucleus, plastid	16.06	6.89

Protein Annotations

EnsemblPlants:CDY67857	EnsemblPlantsGene:GSBRNA2T00067571001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY67857	ProteinID:CDY67857.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EE8EFE	UniProt:A0A078JR38	MapMan:15.5.9	:

Description

BnaCnng56700DBnaCnng56700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR38]

Coordinates

chrLK036586:-:1653..4767

Molecular Weight (calculated)

66350.8 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.683

Length

604 amino acids

Sequence
(BLAST)

001: MDTPQKTVTQ IETPVSKLKV ENSPVFNYIN SLSPITTVKS ISNAQTFSSL SFTSPPPVFT TPHVASHKGS RFRSHSNSSD PSNKVVEEAL PEKEPPQILN
101: NDCLTTTTPR VTNDGSCEDG ETDLQKMCDD NVKRKSDTPD WETLISDSSD MLIYGSPNDS EAFRCFLQRS SDSKTRLCSG SKPALPPVSQ SNEPESSDAL
201: SILHRGVRRR CLDFEMPRNN NQTPRCVVPS IGLHLNAIAM SSKDNNNVSK EYSFTGNVKV GLQSSTKTPV LPSDDIVREN ETREEAAGEE GLEEAPVSLA
301: LVEVSQSSPK KKRQVSEQAG EGESSCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NSDSTIEVGE
401: DASKTPASAR HKRGCNCKKS NCLKKYCECY QSGVGCSINC RCEGCKNAFG RKDGSSFAGM DTEQDQENET SGKSGTTIPL PPSTPMPLRQ PLAQLPISSN
501: NMLPSQQSQQ HLHGASLYNS QSFRKQDMGL MSHSRIETIA EERAEDIENF IHSPVTNINA LSPNSKRVSL PHMDSTETTP WRRNGGRKLL LSSIPTFPSL
601: TPHH

Best Arabidopsis Sequence Match ( AT3G22760.1 )
(BLAST)

001: MDTPEKSETQ IGTPVSKLKV EDSPVFSYIC NLSPIKTIKP IPITCPLSSL NYASPPSVFT SPHAVSHKES RFRSQKDVSA SKEVGEEEAL VGSEPEQSYK
101: NDCNTPRVTN DVKDNGCGKD LQVMMDNVKK KSDTPDWETL IAATTELIYG SPRESEAFSC LLKKTSNSEA RLRGSITATS VAVTNTDVVN NESESVDALS
201: ILHRGVRRRC LDFEVKGNNQ QTLGESSSSC VVPSIGLHLN TIAMSSKDKN VANEYSFSGN IKVGVQSSLT PVLHSQHDIV RENESGKDSG QIIEVVPKSL
301: ASVDLTPISP KKKRRKSEQS GEGDSSCKRC NCKKSKCLKL YCECFAAGFY CIEPCSCINC FNKPIHKDVV LATRKQIESR NPLAFAPKVI RNSDSIIEVG
401: EDASKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSLFEQ DEENETSGTP GTKKTQQNVE LFKPAAPPST PIPFRQPLAQ
501: LPISSNNRLL PPQSHFHHGA IGSSSSGIYN IRKPDMSLLS HSRIETITED IDDMSENLIH SPITTLSPNS KRVSLSHLDS PESTPWRRNG GGRNLIRSFP
601: TFPSLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.