CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036551.1-P	Field mustard	nucleus	96.48	96.27
CDY65712	Canola	nucleus	80.66	80.13
CDX80536	Canola	nucleus	75.6	66.28
CDX88196	Canola	nucleus	74.07	66.08
CDY05340	Canola	nucleus	60.66	57.74
AT5G25790.2	Thale cress	nucleus	63.3	57.14
CDY44573	Canola	cytosol	15.6	50.0
CDY71540	Canola	nucleus, plastid	24.84	42.64
CDY67603	Canola	cytosol	26.37	41.81
HORVU7Hr1G081540.1	Barley	plastid	24.62	38.36
Os06t0332700-00	Rice	nucleus	22.86	34.32
CDY05722	Canola	nucleus	36.26	33.33
CDY31991	Canola	nucleus	36.7	33.0
Os02t0274600-00	Rice	cytosol, nucleus	29.45	30.66
CDY35239	Canola	nucleus	37.58	29.33
CDY28377	Canola	nucleus	21.1	29.27
CDX97461	Canola	nucleus	36.26	29.15
CDY20184	Canola	cytosol	21.54	28.82
CDX92907	Canola	nucleus	34.95	28.49
CDY66476	Canola	nucleus	35.82	28.45
TraesCS7D01G338500.1	Wheat	nucleus, plastid	29.89	27.98
EER89807	Sorghum	cytosol	31.21	27.9
TraesCS7A01G341100.2	Wheat	nucleus, plastid	29.67	27.78
Zm00001d037461_P001	Maize	cytosol	30.99	27.59
TraesCS7B01G242300.1	Wheat	nucleus	29.01	27.22
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	20.22	24.93
Zm00001d015990_P001	Maize	nucleus	29.01	24.91
Os08t0363900-00	Rice	cytosol	19.12	24.51
KXG30022	Sorghum	nucleus, plastid	29.23	24.49
TraesCS2B01G144400.2	Wheat	plastid	29.89	23.09
TraesCS2A01G122300.2	Wheat	plastid	29.45	22.79
HORVU2Hr1G021360.2	Barley	plastid	30.33	22.66
TraesCS2D01G125000.1	Wheat	plastid	28.79	22.28
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	13.85	22.03
CDX79489	Canola	cytosol	12.53	17.65
CDY54822	Canola	cytosol, plastid	20.22	16.76
CDY64242	Canola	nucleus	9.45	16.29
CDY67857	Canola	nucleus, plastid	21.54	16.23
CDY64240	Canola	cytosol, plastid	21.1	16.11
CDY10668	Canola	nucleus, plastid	20.22	16.03
CDY29770	Canola	nucleus, plastid	21.1	14.84
CDY42785	Canola	nucleus, plastid	21.1	14.61
CDY54821	Canola	nucleus	20.88	13.99
CDX74164	Canola	nucleus	15.82	13.79
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	15.6	13.08
CDY10669	Canola	nucleus	20.66	12.57
CDY06853	Canola	cytosol, nucleus, plastid	37.36	12.07
CDX94892	Canola	nucleus, plastid	21.76	7.98
CDX92957	Canola	nucleus, plastid	20.44	7.65

Protein Annotations

EnsemblPlants:CDY19795	EnsemblPlantsGene:GSBRNA2T00009544001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY19795	ProteinID:CDY19795.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EF13EC	UniProt:A0A078FZQ2	MapMan:15.5.9	:

Description

BnaA09g04480DBnaA09g04480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZQ2]

Coordinates

chrLK032100:+:402521..404516

Molecular Weight (calculated)

50429.9 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.853

Length

455 amino acids

Sequence
(BLAST)

001: MDNSDQDLGS PRNQLARRLD FSVSAAAAEM ESSQGSEKHS PLDSNSSRED HKEEDLLPPP PPSGSEEQVL KPPVRSELTT PPQKPPPLNG FDHKSAKCRV
101: SKQEPLTPRG HTEAASNEGT PRKPKHCNCK NSKCLKLYCE CFASGSYCNG CNCLNCHNNL ENETARQEAI TGTLERNPDA FKPKIAGSPL GTEDLQEDVR
201: HQLLILGKHS KGCHCKKSGC LKKYCECFQA NVLCSENCRC QDCKNFEGSV ERNTLLHGPE TYIQQQTVHI NPLESRKRKS KEASHSARGS SAVPHLIRNG
301: DTSLFSVPTT CTYRSSLSNT IQPRHVKDLC ALLVTKSLDV ANKRRKSEKD PSLDPALRDA NETNDSPDCV LDSTRMDEKP LSPATRALMC DDEDVIISEK
401: ETSAARVKTS QEKEEDADTS SESFVEQERQ ILSSFRDFLI QFSNRGNIKG KLIFA

Best Arabidopsis Sequence Match ( AT5G25790.2 )
(BLAST)

001: MEDLSNQNLL PRQSDISIPA EKMDSFQKSL EPPPCSPVKS SQQSETEVTP PQKPPLHQFG HNQVQKNRVS NQDPSTSRRH NEVESKENTP NKQQKHCNCK
101: NSKCLKLYCE CFASGSYCNG CNCVNCHNKL ENESSRQVAI SGILERNPDA FKPKIAGSPH GMKDLQENVQ QVLLIGKHSK GCHCRKSGCL KKYCECYQAN
201: ILCSENCRCQ DCKNFEGSEE RKALLHGSQV SDTYIQQMTN AAVNRAIDMS AYLYPPESRK RKSKDISDSV VSSYGVQYQR ANHVRRNGEN SLFSLPNNKA
301: VSGSTTSAYR SSWSNTFQPH HVRELCSLLV SNSVDVANKL SDKGRKNDKG PSSLDGAQRV ANEINDSPDC VLDANRMDEK PISPATRALM CDEEHEIGSE
401: KETSARVKTS QEKEDTDTSS GIYLEQERQI LSIFRDYLIQ LSNRARINGN LDIVSLFRYL QVEDCANLRH YFKQVKISKA TQIQVERNQK MKNKAIETQI
501: RDIA

Arabidopsis Description

Tesmin/TSO1-like CXC domain-containing protein [Source:TAIR;Acc:AT5G25790]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.