CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, vacuole

Predictor Summary:

nucleus 1
plastid 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74164	Canola	nucleus	84.16	87.55
AT3G04850.1	Thale cress	cytosol	61.14	51.96
CDY44573	Canola	cytosol	7.37	28.17
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	14.36	27.27
CDY54822	Canola	cytosol, plastid	26.7	26.41
CDY64240	Canola	cytosol, plastid	27.99	25.5
CDY67857	Canola	nucleus, plastid	28.36	25.5
CDY10668	Canola	nucleus, plastid	26.89	25.44
CDY71540	Canola	nucleus, plastid	12.34	25.28
CDY29770	Canola	nucleus, plastid	29.28	24.57
CDX79489	Canola	cytosol	14.55	24.46
CDY42785	Canola	nucleus, plastid	28.73	23.74
CDY54821	Canola	nucleus	28.91	23.12
CDY67603	Canola	cytosol	12.15	23.0
CDY10669	Canola	nucleus	28.73	20.86
TraesCS1B01G340500.1	Wheat	cytosol, plastid	13.81	20.05
TraesCS1D01G329200.1	Wheat	plastid	13.81	20.05
TraesCS1A01G327100.1	Wheat	plastid	13.63	19.89
Os05t0509400-01	Rice	cytosol, nucleus, plasma membrane, plastid	13.26	19.25
Zm00001d038660_P003	Maize	nucleus	12.34	18.61
EES19781	Sorghum	cytosol	12.15	18.38
HORVU1Hr1G078000.1	Barley	plastid	13.63	17.92
CDY64242	Canola	nucleus	8.29	17.05
Zm00001d031008_P001	Maize	nucleus	12.34	17.01
TraesCS5A01G054200.1	Wheat	nucleus, plastid	10.68	16.25
TraesCS5D01G065500.1	Wheat	nucleus, plastid	10.68	16.16
TraesCS5B01G062200.1	Wheat	nucleus, plastid	10.68	16.11
EES17352	Sorghum	nucleus	11.97	15.89
Zm00001d041444_P002	Maize	nucleus	11.42	15.74
Os12t0605300-01	Rice	nucleus	11.79	15.72
HORVU5Hr1G013160.11	Barley	nucleus, plastid	11.79	15.65
CDY19795	Canola	nucleus	13.08	15.6
CDY28377	Canola	nucleus	9.39	15.55
CDY20184	Canola	cytosol	9.39	15.0
CDY05340	Canola	nucleus	12.89	14.64
CDY65712	Canola	nucleus	12.34	14.63
CDY05722	Canola	nucleus	13.08	14.34
CDX88196	Canola	nucleus	13.08	13.92
CDY31991	Canola	nucleus	12.89	13.83
CDX80536	Canola	nucleus	13.08	13.68
CDY66476	Canola	nucleus	14.18	13.44
CDX97461	Canola	nucleus	14.0	13.43
CDX94892	Canola	nucleus, plastid	30.02	13.13
CDX92907	Canola	nucleus	13.26	12.9
CDX92957	Canola	nucleus, plastid	28.73	12.83
CDY35239	Canola	nucleus	13.44	12.52
Zm00001d010713_P006	Maize	cytosol	8.1	12.05
CDY06853	Canola	cytosol, nucleus, plastid	13.44	5.18

Protein Annotations

EnsemblPlants:CDY40681	EnsemblPlantsGene:GSBRNA2T00071564001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF46	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY40681	ProteinID:CDY40681.1
SEG:seg	SMART:SM01114	TMHMM:TMhelix	UniParc:UPI0004EEB64F	UniProt:A0A078HSI2	MapMan:15.5.9

Description

BnaC03g33970DBnaC03g33970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSI2]

Coordinates

chrLK032477:-:135359..137752

Molecular Weight (calculated)

60077.5 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.357

Length

543 amino acids

Sequence
(BLAST)

001: MIQTYGAYYF CQNFRTYFFV YIYIYIYMQD SPVFQYINGL SPIEPVKADH AFHSFALASP SSLFSSPQID CVKRHHSRDL SSPVLSLGRE DVLVELKCGG
101: PDEEMANVSE TKAFKEQVKL AIEMASSLST QMGSSDEVVV PMDAENEVMK QSGELCTQLL NELDADSDMV IQTEEMEAEN GSGEQEIPNA KDSRICSFTS
201: VPQQFSNHSG NVVQPCSSVH VAAGALDTTL SSSSNVAAFD STAKAEDDDQ EANLQLSSKQ RSVRRRCLTF DLGGSYKRVS LRDSTNDFPF DFTSINEAPS
301: PQKCIDSSKQ ETDEILPVPG TIGLHFNALV NPSRNKFTSK DGCVLSHAEE EFTTPVSTIK DLVSCDNQIT EEAPERSMEG EWVEELGSCK RCRCKRSRCL
401: KLYCDCFAAG LYCVEPCSCQ NCFNRPIHED IVIKSRRRVE ARNPLAFAPK VVLTSASAAY FGEESNKTPA SARHMRGCNC KKSGCSKKYC ECYLVGVGCS
501: ASCRCIGCKN ILCQTNEQFH LPCAVESDAV TINEEAKDHC DYI

Best Arabidopsis Sequence Match ( AT3G04850.1 )
(BLAST)

001: MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPGRP ENILHSLVFT SPSSSSSLFC SPQLNSYRDS RFFIKRHRSL DLSSPVVLIG ETLKNSPDAL
101: WEEKLKCRPE KLENVSEPKP FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP LDFDADSDGV LHTDEMEAES
201: GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS
301: VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF
401: STPVSTKRDL VVFSDVKIME PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC SCQNCFNKPI HEDLVMKSRE
501: VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD
601: HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL

Arabidopsis Description

TCX4Protein tesmin/TSO1-like CXC 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.