Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001128.1-P | Field mustard | nucleus | 53.21 | 65.26 |
| CDX74164 | Canola | nucleus | 52.74 | 64.56 |
| CDY40681 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 51.96 | 61.14 |
| AT3G22760.1 | Thale cress | nucleus | 26.13 | 27.42 |
| AT4G14770.1 | Thale cress | nucleus | 28.33 | 26.85 |
| AT3G22780.1 | Thale cress | nucleus | 27.39 | 25.18 |
| Zm00001d038660_P003 | Maize | nucleus | 12.21 | 21.67 |
| TraesCS1D01G329200.1 | Wheat | plastid | 12.68 | 21.66 |
| TraesCS1B01G340500.1 | Wheat | cytosol, plastid | 12.68 | 21.66 |
| Os05t0509400-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 12.68 | 21.66 |
| TraesCS1A01G327100.1 | Wheat | plastid | 12.52 | 21.51 |
| EES19781 | Sorghum | cytosol | 11.89 | 21.17 |
| Zm00001d031008_P001 | Maize | nucleus | 12.21 | 19.8 |
| HORVU1Hr1G078000.1 | Barley | plastid | 12.68 | 19.61 |
| EES17352 | Sorghum | nucleus | 12.05 | 18.83 |
| Zm00001d041444_P002 | Maize | nucleus | 11.42 | 18.53 |
| Os12t0605300-01 | Rice | nucleus | 11.74 | 18.43 |
| TraesCS5A01G054200.1 | Wheat | nucleus, plastid | 10.17 | 18.21 |
| TraesCS5D01G065500.1 | Wheat | nucleus, plastid | 10.17 | 18.11 |
| TraesCS5B01G062200.1 | Wheat | nucleus, plastid | 10.17 | 18.06 |
| HORVU5Hr1G013160.11 | Barley | nucleus, plastid | 11.27 | 17.6 |
| AT3G16160.1 | Thale cress | nucleus | 8.61 | 14.95 |
| Zm00001d010713_P006 | Maize | cytosol | 8.29 | 14.52 |
| AT5G25790.2 | Thale cress | nucleus | 11.11 | 14.09 |
| AT4G29000.1 | Thale cress | nucleus | 12.68 | 13.43 |
| AT2G20110.2 | Thale cress | nucleus | 11.89 | 13.15 |
Protein Annotations
| MapMan:15.5.9 | EntrezGene:819645 | UniProt:A0A178VLW7 | ProteinID:AAG51411.1 | ProteinID:AEE74144.1 | ArrayExpress:AT3G04850 |
| EnsemblPlantsGene:AT3G04850 | RefSeq:AT3G04850 | TAIR:AT3G04850 | RefSeq:AT3G04850-TAIR-G | EnsemblPlants:AT3G04850.1 | TAIR:AT3G04850.1 |
| Unigene:At.40769 | EMBL:BT003926 | EMBL:BT005010 | InterPro:CRC | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR005172 | InterPro:Lin-54_fam | RefSeq:NP_187136.3 | ProteinID:OAP06728.1 | PFAM:PF03638 |
| PO:PO:0000293 | PFscan:PS51634 | PANTHER:PTHR12446 | PANTHER:PTHR12446:SF46 | UniProt:Q84JZ8 | SMART:SM01114 |
| InterPro:Tesmin/TSO1-like_CXC | UniParc:UPI000000C1E8 | SEG:seg | : | : | : |
Description
TCX4Protein tesmin/TSO1-like CXC 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JZ8]
Coordinates
chr3:-:1331898..1336076
Molecular Weight (calculated)
70977.3 Da
IEP (calculated)
4.982
GRAVY (calculated)
-0.563
Length
639 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPGRP ENILHSLVFT SPSSSSSLFC SPQLNSYRDS RFFIKRHRSL DLSSPVVLIG ETLKNSPDAL
101: WEEKLKCRPE KLENVSEPKP FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP LDFDADSDGV LHTDEMEAES
201: GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS
301: VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF
401: STPVSTKRDL VVFSDVKIME PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC SCQNCFNKPI HEDLVMKSRE
501: VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD
601: HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL
101: WEEKLKCRPE KLENVSEPKP FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP LDFDADSDGV LHTDEMEAES
201: GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS
301: VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF
401: STPVSTKRDL VVFSDVKIME PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC SCQNCFNKPI HEDLVMKSRE
501: VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD
601: HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.